Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1420 ATGGCATCTGCCAGCCTAGGACATGGGGGAGTAGGCAGTTCCAGGACTGCAAATGGCTTTAAGGGGTCATCAAGTTCAGTTGACTGGCTGGGGAGAGAGATGCTTGAGATGAGATTGAGAGACAGGGTGGACCAAGATGATGACAGAGATAGCGAACCTGATATTATTGATGGTGTGGGTGCTGAAGCAGGTCATGTAATAAGAACAACTTTTGGTGGTCGAAATGGTCAATCTAAGCAGACTGTTAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAGCAAAATGTAGAGAGACTGGAGAGATTGTCGCCATCAAGAAGGTTCTCCAAGACAAGCGCTACAAGAATAGGGAGTTACAGATTATGCAAATGTTGGACCATCCTAATATTGTTGCCCTTAAGCATTGTTTCTTTTCTACAACCGACAAGGAAGAGCTGTACCTGAATCTTGTACTTGAATTTGTTCCGGAGACTGTTAATCGTATTGCAAGGAACTACAGCAGGATCAACCAGCGAATGCCCTTAATATATGTGAAACTCTATACCTATCAGATCTGCAGAGCGCTTGCGTATATACATAATTGCATTGGTATTTGTCACCGTGACATCAAGCCTCAGAACTTACTTGTGAACCCACACACGCATCAGCTGAAACTTTGTGATTTTGGGAGTGCGAAAGTTTTGGTAAAAGGAGAACCCAATGTTTCTTATATCTGCTCAAGATATTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAGGTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACTCGTCTTCCTAATGGCCGTCCTCTTCCTCCCCTCTTTAATTTCAAACCTCAAGAGCTCTCTGGCATCCCATCTGATATCCGCACACGGCTTATTCCAGAACATGCACGAAAGCAAAACTTATTCATGGCTCTGCACACCTAA 1269 0.4405 MASASLGHGGVGSSRTANGFKGSSSSVDWLGREMLEMRLRDRVDQDDDRDSEPDIIDGVGAEAGHVIRTTFGGRNGQSKQTVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKEELYLNLVLEFVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPSDIRTRLIPEHARKQNLFMALHT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1420 422 SUPERFAMILY Protein kinase-like (PK-like) 83 395 IPR011009 -
Vvi12g1420 422 MobiDBLite consensus disorder prediction 1 23 - -
Vvi12g1420 422 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 53 414 - -
Vvi12g1420 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vvi12g1420 422 FunFam Shaggy-related protein kinase kappa 164 412 - -
Vvi12g1420 422 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Vvi12g1420 422 MobiDBLite consensus disorder prediction 9 23 - -
Vvi12g1420 422 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Vvi12g1420 422 Gene3D Phosphorylase Kinase; domain 1 70 163 - -
Vvi12g1420 422 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1420 422 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1420 422 Pfam Protein kinase domain 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1420 422 CDD STKc_GSK3 79 371 IPR039192 -
Vvi12g1420 422 Gene3D Transferase(Phosphotransferase) domain 1 164 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1420 Vvi-Chr12 20815260 20831239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1420 90 376 Core Cell Cycle Gene Families AT1G76540 34.915 3.32e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vvi12g1420 Pkinase 3.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1420 K03083 - vvi:100252299 845.884