LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g1420	ATGGCATCTGCCAGCCTAGGACATGGGGGAGTAGGCAGTTCCAGGACTGCAAATGGCTTTAAGGGGTCATCAAGTTCAGTTGACTGGCTGGGGAGAGAGATGCTTGAGATGAGATTGAGAGACAGGGTGGACCAAGATGATGACAGAGATAGCGAACCTGATATTATTGATGGTGTGGGTGCTGAAGCAGGTCATGTAATAAGAACAACTTTTGGTGGTCGAAATGGTCAATCTAAGCAGACTGTTAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAGCAAAATGTAGAGAGACTGGAGAGATTGTCGCCATCAAGAAGGTTCTCCAAGACAAGCGCTACAAGAATAGGGAGTTACAGATTATGCAAATGTTGGACCATCCTAATATTGTTGCCCTTAAGCATTGTTTCTTTTCTACAACCGACAAGGAAGAGCTGTACCTGAATCTTGTACTTGAATTTGTTCCGGAGACTGTTAATCGTATTGCAAGGAACTACAGCAGGATCAACCAGCGAATGCCCTTAATATATGTGAAACTCTATACCTATCAGATCTGCAGAGCGCTTGCGTATATACATAATTGCATTGGTATTTGTCACCGTGACATCAAGCCTCAGAACTTACTTGTGAACCCACACACGCATCAGCTGAAACTTTGTGATTTTGGGAGTGCGAAAGTTTTGGTAAAAGGAGAACCCAATGTTTCTTATATCTGCTCAAGATATTACCGTGCCCCAGAACTCATATTTGGTGCCACTGAATATACGACTGCTATAGATATTTGGTCTACTGGCTGTGTGATGGCTGAATTGCTTCTGGGACAGCCTTTGTTTCCTGGAGAAAGCGGAGTTGATCAACTAGTTGAGATCATCAAGGTCTTGGGAACACCTACCAGGGAGGAGATAAAATGTATGAATCCAAACTACACCGAATTTAAATTCCCACAAATAAAGCCTCATCCATGGCACAAGGTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACTCGTCTTCCTAATGGCCGTCCTCTTCCTCCCCTCTTTAATTTCAAACCTCAAGAGCTCTCTGGCATCCCATCTGATATCCGCACACGGCTTATTCCAGAACATGCACGAAAGCAAAACTTATTCATGGCTCTGCACACCTAA	1269	0.4405	MASASLGHGGVGSSRTANGFKGSSSSVDWLGREMLEMRLRDRVDQDDDRDSEPDIIDGVGAEAGHVIRTTFGGRNGQSKQTVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKEELYLNLVLEFVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPSDIRTRLIPEHARKQNLFMALHT*	423

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vvi12g1420	422	SUPERFAMILY	Protein kinase-like (PK-like)	83	395	IPR011009	-
Vvi12g1420	422	MobiDBLite	consensus disorder prediction	1	23	-	-
Vvi12g1420	422	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	53	414	-	-
Vvi12g1420	422	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
Vvi12g1420	422	FunFam	Shaggy-related protein kinase kappa	164	412	-	-
Vvi12g1420	422	FunFam	Glycogen synthase kinase-3 beta	68	163	-	-
Vvi12g1420	422	MobiDBLite	consensus disorder prediction	9	23	-	-
Vvi12g1420	422	ProSitePatterns	Protein kinases ATP-binding region signature.	90	114	IPR017441	GO:0005524
Vvi12g1420	422	Gene3D	Phosphorylase Kinase; domain 1	70	163	-	-
Vvi12g1420	422	SMART	serkin_6	84	368	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g1420	Vvi-Chr12	20815260	20831239	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g1420	90	376	Core Cell Cycle Gene Families	AT1G76540	34.915	3.32e-57	189

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Vvi12g1420		Pkinase	3.7e-64	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g1420	K03083		-	vvi:100252299	845.884

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