Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1419 ATGGTAATTTGGAATATTGGGTGGGGGTTGCCTCTGTTTTTTAAGGATGGTTTCTGTCGCCTCATATTTATAGCCAAAAACAAAACAAAACCCAAAAACCAGAGGAGGGATTGGAACCTGTGGTTGGCGTTTGTTTGGTTGTCAGCAGTGATGGCGGCGGAAGGTGCTGGTGGTGGTGGAAGTGACGGCGGCGGATGCGGCGGAGGAAGAGGAGGAGGAGGAGGAGGGGGGAATGAGATGGCGGGGACGTCGCCGAAGAACAGGGTGAAGCTGCTCTGCAGCCACGGCGGGAAGATTCTGCCGCGGGCGACGGACGGCGTCCTCAAGTACGTCGGCGGCGAGACCAGAGTTGTCGCATTTTCTCGCGACATCAATTTCTCAGAGCTCAAGCAAAAAGTTACTTCTCTATTTGATGGGGATTTGGTCCTCAAGTATCAGCTTAGCCCTGAAGATCTCGATGCCCTGGTGTCTGTAAAATCCGATGAAGATCTCCGCCATATGCTCGATGAATATGACCGACAGGAGGGCGAAGGAACCCCTAGGCTCCGAGCCTTCCTCTTCCCCTCCGCCCCCGTCGTTCTCGACGTCCAAATCACCTCCACAGACCCCCATGCGCTTGAGCAGCGCTATATTGACGCCATCAATGGAATCGTCCGGATCCGTCCCACCCTCAAAATCATTCCCCCGAAACCATCCCTCGCATCGTTTACCATTTCCTCCGCCTGCTCCTCCCCTAATTCCCTCTCCCCTGACCCTTTCTCCCATGATTCGACCACCAGCCATGAAAGCGTGGTCCCTAGAGGAGCTCTCATGCATAAGGTCCGAAGCTCTCCCAGTTTATACAGCCCGGACCAGCAGACGGCCGATACCCATCTTAGCAGCCCCTTGGTCTACCAGCACCCAAACCATTACCACCAGAACTACCAGCAGTACCACCACCCGGGCTTCCAATCCGCCAGGCCACCACAGGATCCCAGCAAGGGAGCTGCAGGGGAAAGATCGACTTCAGGTCTGTCAAAGGGCAGGACGGATTCTGGGAGAGGTCTTATGGGAAGCGGGCCGAGCTCCTACTACTCATCAGCAAGACAACACAAGGGTTTTGGGAGCAGCAACAAGTATGTTCACTTGGAGGAGGGGAGTAGCCATGGAGGTCAAAAGGCTTGA 1164 0.5515 MVIWNIGWGLPLFFKDGFCRLIFIAKNKTKPKNQRRDWNLWLAFVWLSAVMAAEGAGGGGSDGGGCGGGRGGGGGGGNEMAGTSPKNRVKLLCSHGGKILPRATDGVLKYVGGETRVVAFSRDINFSELKQKVTSLFDGDLVLKYQLSPEDLDALVSVKSDEDLRHMLDEYDRQEGEGTPRLRAFLFPSAPVVLDVQITSTDPHALEQRYIDAINGIVRIRPTLKIIPPKPSLASFTISSACSSPNSLSPDPFSHDSTTSHESVVPRGALMHKVRSSPSLYSPDQQTADTHLSSPLVYQHPNHYHQNYQQYHHPGFQSARPPQDPSKGAAGERSTSGLSKGRTDSGRGLMGSGPSSYYSSARQHKGFGSSNKYVHLEEGSSHGGQKA* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1419 387 MobiDBLite consensus disorder prediction 312 387 - -
Vvi12g1419 387 Pfam PB1 domain 108 188 IPR000270 GO:0005515
Vvi12g1419 387 CDD PB1_UP2 92 187 - -
Vvi12g1419 387 SMART PB1_new 103 189 IPR000270 GO:0005515
Vvi12g1419 387 SUPERFAMILY CAD & PB1 domains 105 191 - -
Vvi12g1419 387 PANTHER OS05G0427100 PROTEIN-RELATED 83 358 - -
Vvi12g1419 387 Gene3D - 109 187 - -
Vvi12g1419 387 MobiDBLite consensus disorder prediction 245 264 - -
Vvi12g1419 387 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1419 Vvi-Chr12 20811695 20814101 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1419 87 219 MAP Kinase Kinase Kinase AT5G57610 48.889 9.55e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1419 - - vvi:100257434 613.609