Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1415 ATGTCTCATCGCAAGTTTGAGCACCCAAGACATGGCTCTTTGGGATTTCTTCCCAGGAAAAGAGCTGCCCGTCACAGAGGAAAAGTGAAGGCCTTTCCCAAGGATGATCCAACAAACCCTTGCAGATTAACTGCTTTCCTTGGATACAAAGCTGGCATGACCCATATCGTCAGAGAAGTTGAGAAACCAGGGTCAAAACTACACAAGAAAGAAACATGCGAAGCAGTAACTATCATAGAAACGCCACCAATGGTGGTTGTTGGTGTTGTTGGTTATCTCAAGACACCGCGTGGCCTTCGTTCTCTGAATACTGTTTGGGCCCAGCATCTTAGTGAGGAGGTGAAGAGGAGATTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAATATTCTAAGAAATATGAATCTGAAGATGGGAAGAAGGATATTCAAGCTCAATTGGAGAAAATGAAGAAGTACTGCAATGTGATTCGTGTTTTGGCCCATACCCAGATTAGAAAAATGAAGGGCCTGAAGCAGAAAAAGGCTCACCTTATGGAGATTCAGGTGAATGGTGGAGATGTTGCTAAGAAGGTTGACTATGCCTATGGTTTCTTTGAGAAGCAGATTCCAATTGATGCTATATTCCAGAAAGATGAGATGATTGATATCATTGGAGTAACTAAGGGTAAGGGATATGAGGGTGTTGTTACCCGTTGGGGTGTAACTCGCCTTCCTCGTAAGACCCACCGTGGGCTTCGCAAGGTGGCCTGTATTGGTGCCTGGCATCCAGCTAGGGTATCATTTACAGTTGCCAGAGCTGGGCAGAATGGTTACCATCATCGCACAGAGATGAACAAGAAGATTTACAAGGTTGGAAAGACTGGCCAAGAGTCCCATTCTGCCATGACCGAGTTTGACAGGACCGAGAAGGATATTACCCCAATGGGAGGATTCCCACATTATGGGGTGGTGAAAGACGATTACCTGCTGATCAAAGGATGTTGCGTGGGACCAAAGAAGCGAGTTGTCACATTGAGGCAGTCACTGTTGAAGCAAACATCTAGGGTTGCTATGGAGGAGATTAAACTCAAGTTCATTGATACATCCTCTAAGTTTGGCCATGGTCGCTTCCAGACAACCCAGGAGAAGGCCAAGTTCTTTGGACGGCTCAAGGCTTGA 1170 0.4573 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTNPCRLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYLKTPRGLRSLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYSKKYESEDGKKDIQAQLEKMKKYCNVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGDVAKKVDYAYGFFEKQIPIDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKVGKTGQESHSAMTEFDRTEKDITPMGGFPHYGVVKDDYLLIKGCCVGPKKRVVTLRQSLLKQTSRVAMEEIKLKFIDTSSKFGHGRFQTTQEKAKFFGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1415 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Vvi12g1415 389 MobiDBLite consensus disorder prediction 1 20 - -
Vvi12g1415 389 Gene3D Translation factors 44 385 - -
Vvi12g1415 389 FunFam 60S ribosomal protein L3 83 207 - -
Vvi12g1415 389 Gene3D - 83 207 - -
Vvi12g1415 389 FunFam 60S ribosomal protein L3 1 79 - -
Vvi12g1415 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vvi12g1415 389 FunFam Ribosomal protein L3 265 389 - -
Vvi12g1415 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vvi12g1415 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Vvi12g1415 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Vvi12g1415 389 FunFam 60S ribosomal protein L3 44 160 - -
Vvi12g1415 389 FunFam 60S ribosomal protein L3 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1415 Vvi-Chr12 20756393 20759728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1415 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 89.637 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1415 K02925 - vvi:100267716 790.801