Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1412 ATGGCTTCTTTCATTGCTCTTGCACTAGTCCTTTTCCTCCGGCTGAGTACCCCATCTTTTTCATCTTCTCTGAGCAGTGATTTTCACGCTTTGGTGGCTCTAAAACGGGGATTTGCGTTCTCTGATCCGGGTTTGAGCTCATGGAACGTCTCGACTCTGAGCTCGGTCTGCTGGTGGAGAGGAATTCAATGCGCTCATGGGCGGGTTGTGGGACTGGACTTGACAGATATGAACCTCTGCGGCTCAGTTTCTCCAGACATTTCCCGCCTTGATCAGCTCAGCAACATCTCCATTTCCGGAAACAACTTCACTGGCCCGATAGAGATTCAGAATTTGAGCTCCCTCCGGTGGCTCAACATCTCCAACAACCAGTTCAGCGGCAGCTTGAATTGGAGCTTTTCGACAATGGAAGACTTGGAAGTATTAGACGCATACAACAACAACTTCACTGCTCTTCTCCCTCAGGGCGTCTTGAGCTTGAAGAAGCTCAGGTACTTAGACCTTGGGGGCAACTTCTTTTATGGGAAAATCCCAAAAATCTATGGAGGCCTGGCCGCCCTCGAGTACTTATCGCTTGCAGGCAACGATCTTCGCGGAAAAATACCTATTGAGTTGGGGAATCTCACAAGTTTGAAGGAAATTTACTTGGGGTACTACAATTCTTTCACAGACGGTATTCCAAGTGAGTTTGGCAAGCTGATCAACCTGGTTCACATGGATCTTTCGAGCTGTGAGCTAGACGGGCACATCCCGGAAGAGCTCGGGAACTTGAAGTCCCTCAACACCCTCTTTCTCCACATCAATCAGCTGTCTGGTTCGATCCCGAATCGTCTCGGTAATCTAACAAGCTTGGTGAACCTTGATCTCTCCAACAACGCCCTCACAGGTGAAATTCCCTTAGAGTTGAGTAATCTCCTCCAGCTGAGCTTGCTGAACCTGTTCTTGAACCGCCTCCATGGCTCCATTCCGGACTTCGTTGCAGAGCTCCCCAATCTGCAGACACTAGGCCTATGGATGAATAACTTCACTGGCATCATTCCCGAACGATTAGGCCAGAATGGGAGGCTCCAGGAGCTCGATCTCTCCTCCAACAAGCTCACCGGCGCCATCCCCGGCAACCTTTGCTCGTCCAACCAGCTTCGCATACTAATTCTTCTCAAGAATTTCCTCTTCGGGCCAATTCCGGAGGGGTTGGGGAGGTGTTCTAGTCTCACCAGGGTGAGGCTTGGGCAGAACTATTTGAATGGCAGCATCCCTGGTGGATTCATATACCTGCCTCTGCTCAATCTCATGGAGTTGCAGAACAATTATATATCCGGGACGCTGCCTGAAAACCATAACAGTTCATTCATTCCTGAGAAACTCGGGGAGCTGAATTTGTCAAACAATCTTCTTTCAGGACGGCTGCCATCCTCGCTATCGAATTTCACTTCTCTGCAGATACTTTTGCTGGGTGGGAATCAGTTTTCGGGTCCCATACCTCCCTCCATTGGCGAGCTGAAGCAGGTGCTGAAGCTTGATCTAAGTAGGAACTCGCTTTCCGGTGAAATCCCACTGGAGATTGGGGCTTGTTTTCATCTGACTTACCTTGATATCAGCCAGAACAACCTCTCAGGGCCAATCCCATCTGAGGTTTCCAACATCAAGATCATGAATTACTTGAATTTATCGAGGAATCACTTGAGCGAAGCGATCCCGAAGTCGATTGGATCCATGAAGAGCCTCACTATAGCTGATTTTTCCTTCAATGAATTGTCCGGGAAACTGCCTGAATCAGGCCAATTCGCCTTCTTCAATGCCTCATCATACGCCGGCAATCCTCACCTCTGCGGCTCTCTCCTCAACAATCCATGCAATTTCACCGCCATAAACGGCACGCCGGGAAAACCACCGGCCGACTTCAAGCTCATCTTCGCACTAGGTCTCTTAATCTGCTCACTTGTATTCGCCGCAGCCGCGATAATCAAAGCAAAATCATTCAAAAAAACCGCATCCGATTCATGGCGGATGACAGCATTCCAGAAGGTGGAATTCACCGTCGCCGACGTCCTCGAGTGCGTCAAGGACGGCAACGTCATCGGCCGCGGCGGCGCAGGGATCGTCTACCACGGAAAAATGCCCACCGGCGCCGAAGTCGCAGTCAAAAAACTCCTTGGATTCGGCCCCAACAGCCATGATCACGGCTTTCGGGCTGAGATCCAAACCCTAGGGAACATCAGGCATCGGAACATCGTCCGATTAATCGCATTCTGCTCGAACAAGGAGACGAATCTTCTCGTATACGAGTACATGAAAAATGGGAGTCTAGGAGAGGCACTGCATGGGAAAAAGGGCGGATTCCTGGGGTGGAATCTGAGGTACAAAATCGCGGTCGACGCTGCTAAAGGATTATGCTACCTCCACCATGACTGCTCGCCCTTGATCGTTCATCGGGATGTGAAATCGAACAACATTCTCTTGAATTCCAGTTTCGAAGCGCACGTCGCCGATTTTGGGCTCGCCAAGTTCTTGATCGACGGCGGCGCGTCGGAATGCATGTCTGCAATTGCAGGATCTTATGGCTACATCGCACCAGAATATGCATACACTCTAAGAGTCGATGAAAAAAGCGATGTATATAGTTTTGGAGTTGTATTGTTAGAGCTCATCACGGGACGTCGCCCTGTGGGTGATTTTGGAGAAGGTGTGGACATTGTACAATGGGCAAAAAGAACAACTAACTGTTGCAAAGAAAATGTTATTCGAATTGTTGATCCAAGGTTAGCGACAATACCCAGAAATGAAGCGACGCATTTATTCTTCATAGCATTGTTATGCATTGAAGAGAACAGTGTTGAGCGGCCGACAATGAGAGAGGTGGTTCAAATGCTATCCGAGTCCCATCGTAACTCCCCCGACAACAAAACTTCATCATCATCAATTGTTCTTTAG 2931 0.492 MASFIALALVLFLRLSTPSFSSSLSSDFHALVALKRGFAFSDPGLSSWNVSTLSSVCWWRGIQCAHGRVVGLDLTDMNLCGSVSPDISRLDQLSNISISGNNFTGPIEIQNLSSLRWLNISNNQFSGSLNWSFSTMEDLEVLDAYNNNFTALLPQGVLSLKKLRYLDLGGNFFYGKIPKIYGGLAALEYLSLAGNDLRGKIPIELGNLTSLKEIYLGYYNSFTDGIPSEFGKLINLVHMDLSSCELDGHIPEELGNLKSLNTLFLHINQLSGSIPNRLGNLTSLVNLDLSNNALTGEIPLELSNLLQLSLLNLFLNRLHGSIPDFVAELPNLQTLGLWMNNFTGIIPERLGQNGRLQELDLSSNKLTGAIPGNLCSSNQLRILILLKNFLFGPIPEGLGRCSSLTRVRLGQNYLNGSIPGGFIYLPLLNLMELQNNYISGTLPENHNSSFIPEKLGELNLSNNLLSGRLPSSLSNFTSLQILLLGGNQFSGPIPPSIGELKQVLKLDLSRNSLSGEIPLEIGACFHLTYLDISQNNLSGPIPSEVSNIKIMNYLNLSRNHLSEAIPKSIGSMKSLTIADFSFNELSGKLPESGQFAFFNASSYAGNPHLCGSLLNNPCNFTAINGTPGKPPADFKLIFALGLLICSLVFAAAAIIKAKSFKKTASDSWRMTAFQKVEFTVADVLECVKDGNVIGRGGAGIVYHGKMPTGAEVAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLIAFCSNKETNLLVYEYMKNGSLGEALHGKKGGFLGWNLRYKIAVDAAKGLCYLHHDCSPLIVHRDVKSNNILLNSSFEAHVADFGLAKFLIDGGASECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELITGRRPVGDFGEGVDIVQWAKRTTNCCKENVIRIVDPRLATIPRNEATHLFFIALLCIEENSVERPTMREVVQMLSESHRNSPDNKTSSSSIVL* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1412 976 Gene3D Transferase(Phosphotransferase) domain 1 764 974 - -
Vvi12g1412 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 84 325 - -
Vvi12g1412 976 Pfam Protein tyrosine and serine/threonine kinase 690 957 IPR001245 GO:0004672|GO:0006468
Vvi12g1412 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 622 - -
Vvi12g1412 976 SUPERFAMILY RNI-like 72 390 - -
Vvi12g1412 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 657 763 - -
Vvi12g1412 976 Gene3D Phosphorylase Kinase; domain 1 651 763 - -
Vvi12g1412 976 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 229 959 - -
Vvi12g1412 976 ProSiteProfiles Protein kinase domain profile. 687 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1412 976 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515
Vvi12g1412 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Vvi12g1412 976 SUPERFAMILY Protein kinase-like (PK-like) 677 957 IPR011009 -
Vvi12g1412 976 SMART LRR_typ_2 354 377 IPR003591 -
Vvi12g1412 976 SMART LRR_typ_2 329 353 IPR003591 -
Vvi12g1412 976 SMART LRR_typ_2 233 257 IPR003591 -
Vvi12g1412 976 SMART LRR_typ_2 112 135 IPR003591 -
Vvi12g1412 976 SMART LRR_typ_2 281 305 IPR003591 -
Vvi12g1412 976 SMART LRR_typ_2 136 159 IPR003591 -
Vvi12g1412 976 SMART LRR_typ_2 184 208 IPR003591 -
Vvi12g1412 976 SMART LRR_typ_2 500 524 IPR003591 -
Vvi12g1412 976 SMART serkin_6 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1412 976 MobiDBLite consensus disorder prediction 957 976 - -
Vvi12g1412 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 974 - -
Vvi12g1412 976 SUPERFAMILY L domain-like 354 611 - -
Vvi12g1412 976 Gene3D Ribonuclease Inhibitor 321 623 IPR032675 -
Vvi12g1412 976 Gene3D Ribonuclease Inhibitor 21 80 IPR032675 -
Vvi12g1412 976 Gene3D Ribonuclease Inhibitor 81 320 IPR032675 -
Vvi12g1412 976 Pfam Leucine rich repeat 330 387 IPR001611 GO:0005515
Vvi12g1412 976 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1412 Vvi-Chr12 20631598 20635876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1412 26 965 Receptor kinase-like Gene Family AT5G65700 58.787 0.0 1095
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1412 PK_Tyr_Ser-Thr 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1412 - - vvi:100252582 1878.6