Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1402 ATGGAGAAAGTAGTCATGAATGAACATCAGACCAAATCAGGCCTGAAGCAAACCAATGACATGTCTCGAACCATTTCCATGTTCCGAAAGTACCTCATATCCAAGACTCAGTCCGATGGAGGCAAAACGAACGTGGATGAGTCGGAGACCATCAAAAGGTCGCCTCTCCGCCCTCTCATGGCGCCTAAATTTGGCGGCGGTTCGCCTCGACTGTCGTCTCTCTTGGAGCAGGAGTTGCTTCCGGGACTTAGGTGTGACAACACAATGTCGGATTCATCTGATGACAAGTTCCCTGGGGCACAACTCACAATTTTCTATGCAGGGACTATCAATGTTTACGACCATATTACCATGGATAAGGTTCAAACCATCCTGCATTTTGCTAGGGAAAGCTCTTCTCCTACTAATTCTGAAGCCATGATCCCAAAGAAAGATCCAACGATAGCTCCATCTCATCCATCTGGGTTGCCATCTTTCTGCAGATTACAAGCTGACTTTCCAATTGCGAGAAAATCTTCCCTCCAACGTTTTCTGGAGAAACGTCGTGACCGAATAACAAGCAGATCTCCTTATGCTTCTTCCTCAACAAAACGCAAGGAGAATGAGCAAAAAATAGACAATTATCCAAAGGAAAAGCATTGCTTTTCTCCTTCGGCTTTTCCTTCACAATTAGGATATTTTTTTCCCAGTATCAAGTACTAA 702 0.4459 MEKVVMNEHQTKSGLKQTNDMSRTISMFRKYLISKTQSDGGKTNVDESETIKRSPLRPLMAPKFGGGSPRLSSLLEQELLPGLRCDNTMSDSSDDKFPGAQLTIFYAGTINVYDHITMDKVQTILHFARESSSPTNSEAMIPKKDPTIAPSHPSGLPSFCRLQADFPIARKSSLQRFLEKRRDRITSRSPYASSSTKRKENEQKIDNYPKEKHCFSPSAFPSQLGYFFPSIKY* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1402 233 Pfam Jas motif 167 191 IPR018467 -
Vvi12g1402 233 SMART tify_2 95 130 IPR010399 -
Vvi12g1402 233 MobiDBLite consensus disorder prediction 185 210 - -
Vvi12g1402 233 ProSiteProfiles Tify domain profile. 95 130 IPR010399 -
Vvi12g1402 233 Pfam tify domain 100 128 IPR010399 -
Vvi12g1402 233 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 23 199 IPR040390 -
Vvi12g1402 233 MobiDBLite consensus disorder prediction 195 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1402 Vvi-Chr12 20515022 20518605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1402 92 200 Tify Gene Family AT5G20900 40.000 1.86e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vvi12g1402 tify 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1402 K13464 - vvi:100244072 470.7