Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1380 ATGGAGTTAACAGATTTGCAGAGTGGTAAGCAAGGCAATGCAACTGGTAATTCGCAGCAGCAGCAGCAGCAGCAGCAGCCCCACCACCACCTCCACCGTCAGCAGCAGCAGCACCACCAGCTGCTTCATCAGCAACAAAAATCGGGAGGATCTTCATCGCAGCAGATGGTGGTCCCTTTTGTTGGGCGGGCAGGTGGTGGAGGAGGACCATCCCACCCAGCCCCATTCATGGGCTCCAGCCCCAGCCAACCTGGCCTCCTTCGAAATATGGATGCCACCACCTCTTCTTCTTCTCCAAACTCCACTTCTTCTGTCAGTGGTAATAGCTCCTCCACTACTCCTTCTCCGGCTCCGCCGCCGCAGCTGGTTGACGCCTCCCTCGCCATCGCTACCAGATCCGAGGCTGACCGGAGCCGATCGGGCGGCGGTGTGGTAGATTCGACGAAGAAAAACCAACAGCAACAGCAACAGCAACAACAACAACAGCAGCAGCAGCTGACAATTGGGACGAATCCTCCGGCGAAGAGATCCACCAAGGACCGCCACACCAAGGTCGACGGCCGAGGGCGGCGCATCCGAATGCCGGCCACCTGTGCGGCTAGGGTTTTTCAGTTGACGAGAGAGTTGGGGCACAAGTCCGACGGGGAAACCATCGAATGGCTGCTGCAGCAGGCGGAGCCTGCGATTATCGCTGCCACCGGGACTGGAACCATCCCGGCTAACTTCTCCACGCTCAACGTCTCCCTCCGGAGCAGCGGTTCGACCATCTCGGCACCTCCGTCGAAATCGGCACCGCACTCGTTTCACGGCGCGTTAGCCCTAGCTCACCACCCTCACTACGAGGAAGGGTTTCCTCACACCGCTATGCTAGGGTTTCATCAGCAGCCACATTTGTTGTCAGCAGATCAGATTGGTGACGCTCTCCCGGGCGGTGGGGGTGCTGGGAGCGGTGGCGGTGGCAGTGACGAGAATTATATGCGAAAACGCTTCAGAGGAGATCTCTTCAAGGATGAAGACTCAAATCAAGCACTGGAAAACACTACTACTGCATCCGAGGCCGCCTCAGGCAATGGAAACAATAAAACCACCTCACTACACATGGGCAAGTCTCCCCAGGAGCAGCAGCCAGGTCCCTCCGGCCTGCTCCGCCCCTCCAACATCCTTCCAGCCACCGCCATGTGGGCGGTGGCACCCGCCCCAAACAGCGGCGCAGGCAGCACATTCTGGATGCTGCCTGTTACAACCGGAGCAGGAGGGCCATCCGCAGCAGTGGGGGCATCCGGAGCCGGCCCGTCCGAGCCCCACATGTGGGCTCTCCCCACCGCAGCGCCAACCACAACCGGCAACACCCTCCAAGCCCCTCTACATTTCATGCCGAGGTTCAACCTGGCCAGCAACCTCGACTTCCAAGGCGGAAGAGCGAACCCTCTGCAATTAGGGTCCATGTTGATGCAGCAGCACCCCTCTCAGCACCTGGGGTTAGGAGTTTCAGAGACGAATTTGGGGATGTTGGCGGCCCTAAACGCCTACTCCAGAGGCGGTTTGAATATGAATTCGGAGCAAAACCATCCAATGGAACACCACCAACAGCACCCGCACCAGCCTCAAGGAACAGACAGTGGAGATGAAGATCCAAACAGCTCACAATAG 1650 0.5867 MELTDLQSGKQGNATGNSQQQQQQQQPHHHLHRQQQQHHQLLHQQQKSGGSSSQQMVVPFVGRAGGGGGPSHPAPFMGSSPSQPGLLRNMDATTSSSSPNSTSSVSGNSSSTTPSPAPPPQLVDASLAIATRSEADRSRSGGGVVDSTKKNQQQQQQQQQQQQQQLTIGTNPPAKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTISAPPSKSAPHSFHGALALAHHPHYEEGFPHTAMLGFHQQPHLLSADQIGDALPGGGGAGSGGGGSDENYMRKRFRGDLFKDEDSNQALENTTTASEAASGNGNNKTTSLHMGKSPQEQQPGPSGLLRPSNILPATAMWAVAPAPNSGAGSTFWMLPVTTGAGGPSAAVGASGAGPSEPHMWALPTAAPTTTGNTLQAPLHFMPRFNLASNLDFQGGRANPLQLGSMLMQQHPSQHLGLGVSETNLGMLAALNAYSRGGLNMNSEQNHPMEHHQQHPHQPQGTDSGDEDPNSSQ* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1380 549 MobiDBLite consensus disorder prediction 144 174 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 514 549 - -
Vvi12g1380 549 Pfam TCP family transcription factor 177 298 IPR017887 -
Vvi12g1380 549 Coils Coil 145 165 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 534 549 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 1 192 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 346 381 - -
Vvi12g1380 549 ProSiteProfiles TCP domain profile. 178 232 IPR017887 -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 346 385 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 302 326 - -
Vvi12g1380 549 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 106 510 IPR005333 GO:0003700
Vvi12g1380 549 MobiDBLite consensus disorder prediction 175 191 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 1 30 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 76 112 - -
Vvi12g1380 549 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1380 Vvi-Chr12 20150265 20151914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1380 175 549 TCP Transcription Factor Family AT1G58100 42.711 1.66e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi12g1380 TCP 2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1380 - - vvi:100243917 913.679