Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1379 ATGAATATGATCAAGGAATTCGACTACAAGGAGCTCGAAGAAGCGACTCAAGGCTTCTCTCCTACTCATCTTATCGGTAAAGGAAGCCATGGATTAGTCTACAAGGGAGCTCTACAAGACGGCAAGCTCGTCGCGATAAAAAAACCTTCCCCGGGCCTTCAAATCCTTCGCGACAACACCAAGATCGATAACGAAATAAGTATGTTATCTTCGCTACCCGAAAACCCTAATATCATCAGTTTGCTTGGTACGAGTCACGACTCAGCCATGAACAAGGTTTTAGTTATGGAACTCATGCCTAATGGCTCTCTTCATGACTTGTTGCATGTTTCCACTACGCCACCAACATGGCCTCAACGCTTAGGGATGGCCATGCAGATAGCTAGGGCAGTGCAGTTCCTTCATGAGGAGAAGCCTTTGGTTGTCCATAGGGATATCAAGTCTGCCAACATTTTGTTTGATTCAGAATGGAATGCCAAGTTGGCAGATTTTGGGCTCGCCGTTCGAAAAAATGAAAATATAGACCATTCCCGAGTCGACTCATTGAGTCAACCCGCCGGGACTATTGGGTATTTGGATCCTTGTTATACCACCCCTAGCAAACTAAGTACAAAAAATGATGTGTTTAGCTTTGGGGTAGTGCTACTAGAAGTTATTAGTACTAGTAAAGTTATAGATCTGTCAAGGACACGGACTCATATAGTCGAGTGGGCAATACCATTAATAAAAAAGGATCGGATAAAGGAGGTTTGCGACTCAAGGACTGAGTTACCGATGTGCATGGAGGGTACTATAAGACATATCTTGCGTGTGGCGGCCCGTTGTGTCTCCTCAAGGGAAGATCTTCGACCATCGATGCAACAAATCATCATTGATATCGATAAACATCGATCCATCGACCGGGTTCGGGTTCCGATTTGGTCAAGCCTCTTAGAAAGTGTAGTTCTTATAAGAAGGGGGCGAAGATCAGCATCCCGATTTAGGGGGGCTAACTCAGTGAAGTGTGCAACTCACAAAGGAGAAGTTGGTGGTGAGTTTGCAAGAGGGAAGGTGTTGTTGAGGGATGTTTTGGCTGAAATATGCTAG 1086 0.4503 MNMIKEFDYKELEEATQGFSPTHLIGKGSHGLVYKGALQDGKLVAIKKPSPGLQILRDNTKIDNEISMLSSLPENPNIISLLGTSHDSAMNKVLVMELMPNGSLHDLLHVSTTPPTWPQRLGMAMQIARAVQFLHEEKPLVVHRDIKSANILFDSEWNAKLADFGLAVRKNENIDHSRVDSLSQPAGTIGYLDPCYTTPSKLSTKNDVFSFGVVLLEVISTSKVIDLSRTRTHIVEWAIPLIKKDRIKEVCDSRTELPMCMEGTIRHILRVAARCVSSREDLRPSMQQIIIDIDKHRSIDRVRVPIWSSLLESVVLIRRGRRSASRFRGANSVKCATHKGEVGGEFARGKVLLRDVLAEIC* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1379 361 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Vvi12g1379 361 Pfam Protein kinase domain 22 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1379 361 FunFam Serine/threonine-protein kinase-like protein At5g23170 99 304 - -
Vvi12g1379 361 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Vvi12g1379 361 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Vvi12g1379 361 ProSiteProfiles Protein kinase domain profile. 19 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1379 361 Gene3D Transferase(Phosphotransferase) domain 1 99 304 - -
Vvi12g1379 361 SMART serkin_6 19 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1379 361 PANTHER OS01G0253100 PROTEIN 4 294 - -
Vvi12g1379 361 FunFam Serine/threonine-protein kinase-like protein At5g23170 3 99 - -
Vvi12g1379 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1379 Vvi-Chr12 20121530 20122615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1379 7 295 Receptor kinase-like Gene Family AT3G59420 40.604 1.08e-59 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vvi12g1379 Pkinase 4.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1379 - - vvi:100266242 706.827