Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1377 ATGGCAAGAGTTAGAGTGAAGCCTAACAATGGTGCTGGTGAACTAGGGGGTGAAGGGGTCCGTCCCCAAATCAACCATGAGTCTGTAGTTGAGATTGTGAGATATAAAGAGTGCATGCATAACCATGCAGCCTCTATTGGTTACTATACCATAGATGGATGTGGTGAGTTTTTGAAAGGTGGGGAGGATGGAAGTCCAAAAGCTCTTCTTTGTGCCGCTTGTAAATGTCACCGGAGCTTCCATCGGAAGGAGGTCCTTTTCCATGATGACAACACCAAAGTTTGGTACCTCCATCGCCCTGTGACAATTGCTGCTGCTCCAAATCCACTGCCACGTAATATTTTGCTATACAATTTGAAGGCCCCACCACTGAGTCAACAACAGAATGGGGTATGGTCTGAGAAACTTAGAGGAGGAGAAACCGAGGTGGAAATGAAACGAAGGAAGAAGCCAAGAACAAAGCTGACAAAGGAACAGAAGGAAAGAATGACTGCTTTTGCAGAAAGGGTAGGTTGGAAATCACACAGGCATAATGACCAAGAAATTCGCAAGTTCTGCTCTGATATTGGGATTAGTCGCAGAGTGTTCAAAGTTTGGTTAAACAATAATAGATATGGGAAGGAAGCTACTCTACCACCCTTATCATCTGCATCGCCACCACCACAACCACCATCATCACCACCTCCGCCAATGTCGCCACTTCTCCCACCTTCTGCTCAAGCTAGCATATGA 732 0.459 MARVRVKPNNGAGELGGEGVRPQINHESVVEIVRYKECMHNHAASIGYYTIDGCGEFLKGGEDGSPKALLCAACKCHRSFHRKEVLFHDDNTKVWYLHRPVTIAAAPNPLPRNILLYNLKAPPLSQQQNGVWSEKLRGGETEVEMKRRKKPRTKLTKEQKERMTAFAERVGWKSHRHNDQEIRKFCSDIGISRRVFKVWLNNNRYGKEATLPPLSSASPPPQPPSSPPPPMSPLLPPSAQASI* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1377 243 Pfam ZF-HD protein dimerisation region 33 85 IPR006456 -
Vvi12g1377 243 ProSiteProfiles 'Homeobox' domain profile. 146 210 IPR001356 GO:0003677
Vvi12g1377 243 Gene3D - 133 209 - -
Vvi12g1377 243 MobiDBLite consensus disorder prediction 1 20 - -
Vvi12g1377 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 204 - -
Vvi12g1377 243 SUPERFAMILY Homeodomain-like 139 205 IPR009057 -
Vvi12g1377 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Vvi12g1377 243 CDD homeodomain 149 205 IPR001356 GO:0003677
Vvi12g1377 243 MobiDBLite consensus disorder prediction 214 236 - -
Vvi12g1377 243 NCBIfam homeobox domain, ZF-HD class 149 205 IPR006455 -
Vvi12g1377 243 MobiDBLite consensus disorder prediction 207 243 - -
Vvi12g1377 243 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 34 85 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1377 Vvi-Chr12 20068964 20069695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1377 32 204 ZF-HD Transcription Factor Family AT2G02540 37.436 9.19e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi12g1377 ZF-HD_dimer 5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1377 - - vvi:100250800 436.417