Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1374 ATGGGTTGGTCTTGGATTTTGATAATTCAATTGAATTTCTTGATCGGAAATGCAGATGGGTATGATCCATTGGATCCCAATGGGAATATAGCAATCAAATGGGATGTCTTACAATGGAGTTCTAGTAGTTATGATGCAAGGGTATCGATAATCAACTACCAACTGTATAGGCATATTGAGACACCTGGTTGGAAGTTGAGCTGGACATGGCCCGGTGACGAGGTGATCTGGGACATGTGGGGAGCCTTGGCTCACGAACAAGGAAATTGCAGTGAGTTCAAGGGAGAACAACTCCCTTACTGTTGCGAGAAGACGCCATTGATCCTTGACCGAGGGCCCGGAACTCCGTTCAACAAGCAGGTGGCTAATTGCTGCAGGGACGGCCTGCTCACCTCCATGATACAAGACCCCAGTAAGCATGGGGCCATGTTCCAGATGAATGTGGGCACTGCTTCTAGTAACGTTTCAGACATGACCATGCCCAGAAATTTCAGCCTTGGGGTTCCTGGATATACCTGTGGAGATCCATTTCAGGTCCCACCCAGCAGGTTTCCAGAGGAAGGAGGCCGCCGTTGGACACAAGCTCTCATGACATGGAACGTGAGTTGTTCTTACTCGCAATTTCTAGCATCGACGGCCCCAACATGCTGCGTTTCTTTATCTGCATTCTACAACAGCACCATCGTCCCATGCCCCCAATGCAGCTGTGGCTGTGAAGGAATACCGGGCACCAAATGCGCCAAGCCTGGTGAAACACCATTGTTGTTGCCTCAGGGAGATGGACAGCAGCCGGATCTAGTGAGGTGCTCAAGGCACATGTGCCCAATCCGGGTGCACTGGCATGTGAAAACAAGTTACAGAGAGTATTGGAGGGTTAAGATCACAGTCACAAATCTGAATCTGGTGAAGAACTATTCTGCCTGGAACTTGGTGGTGCTGCACCCCAACTTGCAGAGCATTACACAGGTTTTCAGCTTCAACTACCGCTCTCTAAATGAGCATGGCACTATCAATGATACTGGGATGTTCTGGGGAATTCAGTACTACAATGAGCTGCTTCTGCAGGCAGGTGAGAGTGGGAATGTACAAACGGAGATGTTACTACACAAAGATCCAGGGATTTTCACTTTCAGAGAAGGATGGGCTTTTCCAAGAAAAATATCTTTCAATGGTGACCAATGTGTCATGCCCTCACCAGATGAATACCCAAGGCTCCCCAACACTGGCCCTTCGGCTACCCCACCAAGCCTTTGCATTATTTTGTTATTGTCATTGTCAGTTATAGTAATGCTGTAA 1296 0.4823 MGWSWILIIQLNFLIGNADGYDPLDPNGNIAIKWDVLQWSSSSYDARVSIINYQLYRHIETPGWKLSWTWPGDEVIWDMWGALAHEQGNCSEFKGEQLPYCCEKTPLILDRGPGTPFNKQVANCCRDGLLTSMIQDPSKHGAMFQMNVGTASSNVSDMTMPRNFSLGVPGYTCGDPFQVPPSRFPEEGGRRWTQALMTWNVSCSYSQFLASTAPTCCVSLSAFYNSTIVPCPQCSCGCEGIPGTKCAKPGETPLLLPQGDGQQPDLVRCSRHMCPIRVHWHVKTSYREYWRVKITVTNLNLVKNYSAWNLVVLHPNLQSITQVFSFNYRSLNEHGTINDTGMFWGIQYYNELLLQAGESGNVQTEMLLHKDPGIFTFREGWAFPRKISFNGDQCVMPSPDEYPRLPNTGPSATPPSLCIILLLSLSVIVML* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1374 431 PIRSF COBRA 2 431 IPR006918 GO:0010215|GO:0016020
Vvi12g1374 431 PANTHER PROTEIN COBRA 11 421 IPR006918 GO:0010215|GO:0016020
Vvi12g1374 431 Pfam COBRA-like protein 44 206 IPR006918 GO:0010215|GO:0016020
Vvi12g1374 431 SUPERFAMILY Carbohydrate-binding domain 28 92 IPR008965 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1374 Vvi-Chr12 20045812 20050279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1374 19 431 COBRA Gene Family AT3G29810 54.087 3.00e-172 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1374 - - vvi:100267982 874.004