Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi12g1373 | ATGGCAAATTCCAAGGGGTCATCAAATTTCAGAAATATGATTTCTTCTGGGAAGCACTCTTTACTTCCTCCTAAAAGTCCATTTCCTAGCATTTCCCCCTCGTATGCTGATTATGCCCCCAGTCCTGCAATTGGATCTAAAGTTATTGCAAGGCCTAGAGAGGGAGGAAATACACATCACCAGCGTACTTCCTCTGAAGGCTTTCTTATAGAAGAGCAACCTTCTTGGCTTGATGATCTCCTCAATGAACCAGAGACACCTGTGCGTAGAGGTCACCGGCGTTCCTCAAGTGACTCCTTTGCATACATGGATGCAACTAATGTTTCTAATATAGATCATACAGCTCAGGATGAACTCAAATTTAGAAATTTGATTTCTGCTACTTCATGGGGATCTCAAGACTTTGAACATTACAAAGATGCACGAAATGCTTCTTTTTATGTGGAGCCGAACTCTTTTGGAAGACAAAAGAATAGGACATCCATGACTTACTCAAGTGGCCTTCCTTCTACCAGGGATAGCAATGTCCTGCAAAGCTCAGGATCTTCATGCATTCCACACGAAACAGATGGGGTTTCATCAACAGCCACCGAAAAGCAGGATTTAGTTGAATCAAGTCTACATGACCCTAAGGCTTCTTCTGAAAGAAGGGATTGTTCTCATGCTAAGCCTTCTGCATCTGAGACAGATACAAAGCGTGCTAAACAGCAATTTGCTCAACGCTCACGGGTCCGGAAACTTCAGTACATTGCTGAGCTGGAAAGGAATGTGCAAGCTTTAAAGGCAGAAGGGTCTGAAGTTTCAGCTGAGCTTGACTTTCTCAACCAACAGAATCTTATCCTGAGCATGGAGAACAAAGCCCTGAAGCAGCGATTGGAAAGTTTAGCACAGGAGCAGCTTATTAAGTACTTGGAACAAGAGGTGTTGGAGAGAGAGATCGGAAGGCTACGATCCTTGTATCATCAACAGCAACAGCAGCAGCAGCAACCACAACAACAGCAACCGGCTTCTAGCCACAGGCGCTCCAGCAGCAGAGACCTTGATGCCCAATTTGCTAACCTCTCTTTGAAACACAAGGATAACAGTTCTGGCACTGATGCTGTGACAGGTCCTCTACGTATTTGA | 1125 | 0.4462 | MANSKGSSNFRNMISSGKHSLLPPKSPFPSISPSYADYAPSPAIGSKVIARPREGGNTHHQRTSSEGFLIEEQPSWLDDLLNEPETPVRRGHRRSSSDSFAYMDATNVSNIDHTAQDELKFRNLISATSWGSQDFEHYKDARNASFYVEPNSFGRQKNRTSMTYSSGLPSTRDSNVLQSSGSSCIPHETDGVSSTATEKQDLVESSLHDPKASSERRDCSHAKPSASETDTKRAKQQFAQRSRVRKLQYIAELERNVQALKAEGSEVSAELDFLNQQNLILSMENKALKQRLESLAQEQLIKYLEQEVLEREIGRLRSLYHQQQQQQQQPQQQQPASSHRRSSSRDLDAQFANLSLKHKDNSSGTDAVTGPLRI* | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 1 | 69 | - | - | |
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 320 | 374 | - | - | |
| Vvi12g1373 | 374 | Coils | Coil | 306 | 326 | - | - | |
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 347 | 368 | - | - | |
| Vvi12g1373 | 374 | Coils | Coil | 243 | 298 | - | - | |
| Vvi12g1373 | 374 | PANTHER | BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED | 9 | 356 | IPR044797 | - | |
| Vvi12g1373 | 374 | SUPERFAMILY | Leucine zipper domain | 239 | 281 | IPR046347 | GO:0003700|GO:0006355 | |
| Vvi12g1373 | 374 | CDD | bZIP_plant_RF2 | 230 | 278 | IPR044759 | GO:0003700|GO:0006355 | |
| Vvi12g1373 | 374 | Gene3D | - | 232 | 283 | - | - | |
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 154 | 238 | - | - | |
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 202 | 237 | - | - | |
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 154 | 201 | - | - | |
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Vvi12g1373 | 374 | MobiDBLite | consensus disorder prediction | 320 | 340 | - | - | |
| Vvi12g1373 | 374 | SMART | brlzneu | 228 | 287 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi12g1373 | Vvi-Chr12 | 20041412 | 20045039 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi12g1373 | 72 | 302 | bZIP Transcription Factor Family | AT2G42380 | 31.557 | 3.80e-21 | 90.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi12g1373 | - | - | vvi:100257570 | 690.649 |