Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1372 ATGGATTTGCCTTCTCATTTCCTAGCAATTGCAGGGCTTATTCTGGGGTTGGTGTTATGGTATAATCACTGGAGAGGTAAGACTCTTACTCACAAGAGTAAGGGCATGTCCCCCCCGGAGCCCTCCGGTGCCTGGCCATTTGTAGGTCACCTGCACCTACTACATGGCAAAGTCCCAGTTTTCCGAACCCTTGGAGCCATGGCTGACAAGGTTGGTCCTGTGTTTGTGATCCGGCTTGGAATGTACCGAACACTTGTGGTGAGTAATCGTGAGGCTGCTAAAGAATGCTTCACTACCAATGACAAGATTTTTGCCTCACGCCCAAATTCTAGCGCAGCCAAGATCCTAGGCTACAACTATGCCGCATTTGCCTTTGCTCCTCATGGACCTTATTGGCGTGAGATGCGGAAGCTATCCATGCTAGAAATTCTCTCCACCCGTCGCCTCGGTGACTTGATGCATGTGCAGGTTTCGGAATTGCATGCTGGCATTAAAGATTTGTACATACTTGGCAAAGATAACAACTGGGTGAATCCAAAAAAGGTGGTGATAAGTGAGTGGTTTGAACACCTGACCTTTAATGTAGTCCTGAGGATGGTTGCGGGGAAGAGATATTTTAACAATGTCGTCCATGGGGGTGAGGAAGCAAGGTCTGCTATAGCAGCAATTAAGAAAGTCCTGCTTCTAGTTGGGGCCTCTGTGGCATCAGATGTGATCCCATTTCTTGAGTGGGTGGATTTACAAGGCCATTTGTCCTCTATGAAACTTGTTGCAAAGGAAATGGACTCACTTATTGAAAGCTGGGTAAAAGAACATACAGGGAGGCTCAACAGTGAGGCCAGCAGTAGTCTGGACTTCATAGACATCATGCTAACCAAGCTCAAAGATGCTTCCCTGTTTGGCTACTCGCGCGAGACTATTATCAAGGCAACAGTACTGACCATGATCGTGGCGGGCTCTGACACCACTTCTCTTACCTCTACATGGCTCCTGTCCGCATTGTTGAACAATAAACATGTTATGAAGCATGCTCAGGAAGAGCTAGACTTAAAAGTTGGTAGAGACAGGTGGGTGGAACAATCAGATATCCAGAACCTAGTTTACATTAAGGCTATTGTTAAGGAAACCCTAAGGCTATACACAACATTTCCCCTATTAGTACCACACGAGGCAATGGAAGACTGTCATGTTGGTGGGTATCACATTTCCAAAGGCACCCGCTTGCTAGTCAATGCATGGAAGTTGCACCGAGATCCTGCTGTTTGGTCTAACCCTGAAGAGTTTCAGCCAGAGAGGTTTTTGACAAGCCATGCAAATGTAGATGTGTTTGGCCAGCATTTTGAGTTAATCCCATTTGGTTCTGGTAGAAGATCTTGCCCAGGACTCAATATGGGCTTACAGATGTTACACTTGACAATTGCTCGGTTGCTTCAAGGATTTGACATGACTAAACCATCAAATTCTCCGGTGGACATGACAGAAGGGATAAGTGTCGCTTTGTCTAAGCTCACTCCATTGGAAGTTATGCTCACTCCCCGCCTTCCTGCAGAACTTTATTAG 1560 0.4641 MDLPSHFLAIAGLILGLVLWYNHWRGKTLTHKSKGMSPPEPSGAWPFVGHLHLLHGKVPVFRTLGAMADKVGPVFVIRLGMYRTLVVSNREAAKECFTTNDKIFASRPNSSAAKILGYNYAAFAFAPHGPYWREMRKLSMLEILSTRRLGDLMHVQVSELHAGIKDLYILGKDNNWVNPKKVVISEWFEHLTFNVVLRMVAGKRYFNNVVHGGEEARSAIAAIKKVLLLVGASVASDVIPFLEWVDLQGHLSSMKLVAKEMDSLIESWVKEHTGRLNSEASSSLDFIDIMLTKLKDASLFGYSRETIIKATVLTMIVAGSDTTSLTSTWLLSALLNNKHVMKHAQEELDLKVGRDRWVEQSDIQNLVYIKAIVKETLRLYTTFPLLVPHEAMEDCHVGGYHISKGTRLLVNAWKLHRDPAVWSNPEEFQPERFLTSHANVDVFGQHFELIPFGSGRRSCPGLNMGLQMLHLTIARLLQGFDMTKPSNSPVDMTEGISVALSKLTPLEVMLTPRLPAELY* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1372 519 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PANTHER CYTOCHROME P450 82C3-RELATED 14 519 - -
Vvi12g1372 519 Pfam Cytochrome P450 38 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Vvi12g1372 519 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 191 209 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 Gene3D Cytochrome P450 31 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 CDD CYP82 72 513 - -
Vvi12g1372 519 SUPERFAMILY Cytochrome P450 38 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1372 519 FunFam Cytochrome P450 82C4 28 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1372 Vvi-Chr12 20009428 20011409 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1372 39 519 Cytochrome P450 AT4G31940 50.405 3.49e-175 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1372 - - vvi:100252572 1022.69