Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1368 ATGTCCCCCCCGGAGCCCTCCGGTGCCTGGCCATTTGTAGGTCACCTGCACCTACTACAAGGCAAAGTCCCAGTTTTCCGAACCCTTGGAGCCATGGCTGACAAGGTTGGTCCTGTGTTTGTGATCCGGCTTGGAATGTACCGAGCCCTTGTGGTGAGTAATCATGAGGCTGCTAAAGAATGCTTCACTACCAACGACAAGGTTTTCGCATCACGCCCAAGTTCTAGTGCATCCAAGATCCTAGGCTACAACTATGTCGCATTCGGCCTTGCTCCTTATGGACCTCTTTGGCGTGAGATACGGAAGCTATGCATGCTGGAAATTCTCTCCACCCGTCGCCTCAGTGACTTGATGCATGTGCATGTTTCCGAATTGCATGCTGGCATCAAAGACTTGTACATACTTGGCAAAGATTACAACTGGGTGAATCCAAAAAAAGTGGTGATTAGTGAGTGGTTTGAACACCTGAACTTCAATGTAGTCCTGAGGATGGTTGCGGGGAAGAGATATTTTAACAACGTCGTGCATGGGGGTGAGGAAGCGGGGTCTGCTACAGCAGTAATTAAGAAACTCGTGCCTCTAGCTGGGGCCTTTGTGGCATCAGATGTGATCCCATTTCTTGAATGGGTGGATTTACAAGGCCATTTGTCCTCTATGAAACAAGTTGCAAAGGAAATGGACTCAGTTCTAGAAAGCTGGGTAGAAGAACATACAGGGAGGCTCAACAGTGAGGCCAGCAGTAGGCAGGACTTCATAGACATCATGCTAACCAAGCTCAAAGATGCTTCCCTGTTTGGCTACTCGCGCGAGACTATCATCAAAGCAACAGTAATGATGTTGATCGTGGCAGGCTCTGACACCACTTCTATTACCTCCACATGGCTCCTGTCTGCATTGTTGAACAATAGACATGTTATGAAGCATGCTCAGGAGGAGCTAGACTTAAAAGTTGGTAGAGATAGATGGGTGGAACAATCAGATATCCAGAACCTAGTTTATCTTAAGGCTATTGTTAAGGAAACACTAAGGCTATACCCAGCAGTTCCCCTATTAGTACCACACGAGGCAATGGAAGACTGTCATGTTGGTGGGTATCACATTCCCAAAGGCACCCGCTTGCTAGTCAATGCATGGAAGTTGCACCGAGATCCTGCTGTTTGGTCTAACCCTGAAGAGTTTCAGCCAGAGAGGTTTCTGACAAGCCATGCAACTGTAGATGTTTTAGGCCAGAATTTTGAGTTAATCCCATTTGGTTCTGGTAGAAGATCTTGCCCAGGAATCAATATGGCCTTACAAATGTTACACCTGACAATTGCTCAGTTGCTTCAAGGATTTGACATGGCTACACCATCAAATTCTCCGGTGGACATGGCAGAAGCGATAAGTATCACCATGCCTAAACTCACTCCGCTGGAAGTTATGCTCACCCCCCGCCTTCCTGCTGAACTTTACTAG 1455 0.4735 MSPPEPSGAWPFVGHLHLLQGKVPVFRTLGAMADKVGPVFVIRLGMYRALVVSNHEAAKECFTTNDKVFASRPSSSASKILGYNYVAFGLAPYGPLWREIRKLCMLEILSTRRLSDLMHVHVSELHAGIKDLYILGKDYNWVNPKKVVISEWFEHLNFNVVLRMVAGKRYFNNVVHGGEEAGSATAVIKKLVPLAGAFVASDVIPFLEWVDLQGHLSSMKQVAKEMDSVLESWVEEHTGRLNSEASSRQDFIDIMLTKLKDASLFGYSRETIIKATVMMLIVAGSDTTSITSTWLLSALLNNRHVMKHAQEELDLKVGRDRWVEQSDIQNLVYLKAIVKETLRLYPAVPLLVPHEAMEDCHVGGYHIPKGTRLLVNAWKLHRDPAVWSNPEEFQPERFLTSHATVDVLGQNFELIPFGSGRRSCPGINMALQMLHLTIAQLLQGFDMATPSNSPVDMAEAISITMPKLTPLEVMLTPRLPAELY* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1368 484 PRINTS P450 superfamily signature 415 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS P450 superfamily signature 283 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PANTHER CYTOCHROME P450 82C3-RELATED 3 484 - -
Vvi12g1368 484 CDD CYP82 37 478 - -
Vvi12g1368 484 SUPERFAMILY Cytochrome P450 3 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 272 289 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 292 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 424 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 57 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 156 174 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 376 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 33 52 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 PRINTS E-class P450 group I signature 414 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 Gene3D Cytochrome P450 1 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 Pfam Cytochrome P450 3 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi12g1368 484 FunFam Cytochrome P450 82C4 1 476 - -
Vvi12g1368 484 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 417 426 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1368 Vvi-Chr12 19947481 19949503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1368 4 484 Cytochrome P450 AT4G31940 51.822 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1368 - - vvi:100266388 973.77