Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1353 ATGGCACCATTACTTAAGGATGCTAGTGTTGAATTTCCCCGGGATGTTAGAAAATGTAATTTACAGAGCTCACACAACACGAATAATCAATATTTGGAACATAATCTACCACATCAAAATTTGGGTGAAACCAATTCCAGCTATAGTGAGACTGCAAGTTGCAGGGGCAACTCTTTTCGGTCAGGTAGTGCTTGTGCTGAAAATGCTGGACGGGAAGGTGGGCAAAATGAGACCAAACCATCAATGCTTTATAATTCTCATATACAAGTTGTGGGCCAATCATCTGGAACATGTAATGTGCACACTGGCCAAGTGAAAGAGTTGGTGGGTGCTTTTCCTAATGGCACAGATGACGATGACATACTTGAGGATATTGATGTGGACCAAATAGTTATGGAGCACTACCAATCAACTTGCACACCTCAACCATCAATTTCTAAGCTTCCACCTGTTACTCCAACTTTAAGCACAGTTAATATCGCAAAACATGAGGAAACATTTCTCCCTTTGGAATTGTGCTCAAACTGCAGTCATGGCTTTAAGCTAGGGCTTTGCCCAGAAGCTGCAAATCATTTACAGGAATTGAAGGACATGCTAATTGTCATATCAAATGAACTTCTCGACAATGTTGACCTTACATCAGTGCAGGTAGAGAAGCTTCGCCAAGATAGATTGTACCTGAATAAGCAAATTCAGCAGCTTGAGATACATCTACATTCGGTTTCTGTTGATGAAGAAAGGAAAAATTCAAATTTTTCTGCATCCACCACCACTCCTTGGGCTCAATTTCAAACCCCTCCAGCAACTGCAGTTGGGATTGATCCCATGAGATTTGATGCCCAGGTGCATTTACGTAATGAGCCAGGCAACTATGAGAAGTGGAATACATCATCAGTTTCGTTCTCTTCTATAGATAGGTTTGGTGTTACACCATATCCTCTAGAGAGGGAACCATATATCCCAAAGTTAATCGAAGTCAACTATATTGAAGGCTCAAGTGACAAGAAGTGGAGTAGTGGGAACTTCCCATGGACAAAGAAGCTGGAGGCCAACAACAAGAAAGTTTTTGGAAACCACTCATTCCGCCCCAATCAAAGGGAGGTCATCAATGCTACAATGAGTGGATATGATGTTTTTGTTCTAATGCCTACTGGAGGAGGAAAGAGTCTGACATATCAGCTGCCTGCTCTTATTTCTCCAGGGATTACCCTGGTAATTTCTCCTCTTGTCTCACTAATTCAAGATCAAATAATGCATCTATTGCAGGCAAACATACCTGCTGCTTACTTAAGTGCCAGCATGGAGTGGAACGAACAACAGGAGATCCTTAGAGAACTCAGCTCTTGCAAATACAAGCTATTGTATGCAACTCCAGAGAAAGTTGCTAAAAGTGATGTCCTAATGCGAAACTTGGACAATTTGCATGCTCGTGAATTGCTTTCTAGGATTGTTATTGATGAAGCCCATTGTGTAAGTCAGTGGGGGCATGACTTCCGACCAGATTATCAGGGTCTTGGTATCTTGAAACAAAAATTCCCAAATACTCCAGTTTTAGCTTTAACTGCTACTGCAACAGCCAGTGTAAAAGAAGATGTAGTGCAAGCCCTTGGTCTTGTTAATTGCATTATTTTTCGGCAAAGTTTCAACCGCCCAAATTTATGGTATTCTGTTCTCCCCAAGACAAGAAAGTGTCTGGATGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCAAGATTGGACTGTGAAAAAGTTGCTGAAAGGTTACAGGAATGTGGACACAAAGCAGCATTTTATCATGGTTCCATGGATCCAGCTCGACGTGCCTTCGTTCAGAAGCAATGGAGTAAAGATGAGATTAATATAATTTGCGCAACTGTGGCTTTTGGAATGGGTATCAACAAACCAGATGTCCGCTTTGTCATTCATCATTCTCTTCCAAAATCAATTGAAGGGTATCATCAGGAGTGTGGCCGTGCTGGTAGAGATGGTCAGCGTTCATCTTGTGTGCTGTATTATAGTTACAGTGATTATATCCGAGTGAAGCATATGATCACTCAAGGAGTAGTAGAGCAAAGTCCATTGGCATCTGGACAAAATCGTTCAAATATGGCGAGTTCAGGAAGGATATTGGAAACCAATACTGAAAATCTTCTGCGCATGGTAAGTTATTGTGAAAATGATGTTGATTGCCGGCGTCTCCTACAACTCGTACATTTTGGAGAAAAATTTGATTCGGCCCACTGCAAAAAGACTTGTGACAATTGTTTGAAGATTAAAAGTTTTGTTGAGAAGGATGTTACCGAGATTGCAAAACAGCTGGTCGAGTTGGTGAAGTTAACACGAGAGCAGTTCTCATCATCTCATATCTTGGAAGTGTATAGGGGTTCCTTAAGCCAATATGTTAAGAAACACAGACATGAAACTTTGGGCCTGCATGCGGCTGGGAAACATCTAGCCAAGGGTGAAGCATCTCGAATTTTGCGCCATCTTGTTACTGAGGATTTCCTTATGGAGGATGTTAAGAAAAGCGATATCTATGGGTCTGTGTCATCAGTATTGAAGGTGAACGAATCCAAGGTTTACAAGCTCTTCTCTGGTGGGCAGAAAATTATATTAAGGTTCCCTTCCTCGGCAAAATCATCTAAACTGAGCAATTTTGAAGCAACTCCAGCGAAAGGCTCTCTTACATCAGGAAAGCTAAGTCCTCCACGAATAGAAACCCCTGCTCATCTCCCAGAGGTGGACTTGAATCTGTCAGCAAAACTTTATTCTGCTCTTCGGATACTTCGAACTGTTCTTGTTAAAGAAGCTGGGGAGGGGGTCATGGCATACCACATATTTGGAAATGCCACATTACAGCAAATAAGCAAGAGAATACCCAGAACCAAGGAAGAACTCCTTGAAGTCAATGGCATTGGCAAGGCAAAGATAAGCAAGTACGGAGATAGAGTGCTGGAAACCATTGAGTCAACCATCAAGGAATACTACAAGACGGACAAAAATAGCAGCAGTAGCAATGACAGTACTGATACCATCAAGAGGAGAAGAGAGTCTGCTAAGGTTTTAGATGCAAATCCGGAGGATGATGACTTCACCAAAAGCACCGATCGATCCAGGGGAAGGGCTATGAAAAGGCACAACAAAGGCGGTGAGGCTAACAATACCAGAGAGACAGACTATTACAACCAGTGCATAGATGATGACTTAGACTTTGATGACGCCAATTGTGATGTTGCCATTAACGGGTCAGCTCCAAAGGTTGATAGGGATGGTGCAAGAAGAACACTGCCTTCATGGTCAACACCGAGCAATAAGGGTCACGACCAACATCTCAATATGTTCCAAGAATATTCCTTCAAGGGGACACACATAAAAGCAGGGAAGATGAAGGATGTTGGGCAATTTGCTGTGGCTATAGAGTTTGTATTAGTGTTTCTCTTATAA 3474 0.418 MAPLLKDASVEFPRDVRKCNLQSSHNTNNQYLEHNLPHQNLGETNSSYSETASCRGNSFRSGSACAENAGREGGQNETKPSMLYNSHIQVVGQSSGTCNVHTGQVKELVGAFPNGTDDDDILEDIDVDQIVMEHYQSTCTPQPSISKLPPVTPTLSTVNIAKHEETFLPLELCSNCSHGFKLGLCPEAANHLQELKDMLIVISNELLDNVDLTSVQVEKLRQDRLYLNKQIQQLEIHLHSVSVDEERKNSNFSASTTTPWAQFQTPPATAVGIDPMRFDAQVHLRNEPGNYEKWNTSSVSFSSIDRFGVTPYPLEREPYIPKLIEVNYIEGSSDKKWSSGNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQDQIMHLLQANIPAAYLSASMEWNEQQEILRELSSCKYKLLYATPEKVAKSDVLMRNLDNLHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLWYSVLPKTRKCLDDIDKFIRENHFDECGIIYCLSRLDCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQNRSNMASSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEKFDSAHCKKTCDNCLKIKSFVEKDVTEIAKQLVELVKLTREQFSSSHILEVYRGSLSQYVKKHRHETLGLHAAGKHLAKGEASRILRHLVTEDFLMEDVKKSDIYGSVSSVLKVNESKVYKLFSGGQKIILRFPSSAKSSKLSNFEATPAKGSLTSGKLSPPRIETPAHLPEVDLNLSAKLYSALRILRTVLVKEAGEGVMAYHIFGNATLQQISKRIPRTKEELLEVNGIGKAKISKYGDRVLETIESTIKEYYKTDKNSSSSNDSTDTIKRRRESAKVLDANPEDDDFTKSTDRSRGRAMKRHNKGGEANNTRETDYYNQCIDDDLDFDDANCDVAINGSAPKVDRDGARRTLPSWSTPSNKGHDQHLNMFQEYSFKGTHIKAGKMKDVGQFAVAIEFVLVFLL* 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1353 1157 SUPERFAMILY HRDC-like 929 1002 IPR010997 GO:0000166|GO:0044237
Vvi12g1353 1157 MobiDBLite consensus disorder prediction 1008 1065 - -
Vvi12g1353 1157 SMART hrdc7 926 1008 IPR002121 GO:0003676
Vvi12g1353 1157 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 481 490 IPR002464 -
Vvi12g1353 1157 CDD DEXHc_RecQ 349 549 - -
Vvi12g1353 1157 SMART helicmild6 592 673 IPR001650 -
Vvi12g1353 1157 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 567 728 IPR001650 -
Vvi12g1353 1157 PANTHER DNA HELICASE RECQ FAMILY MEMBER 330 1014 - -
Vvi12g1353 1157 FunFam ATP-dependent DNA helicase Q-like 4A 922 1008 - -
Vvi12g1353 1157 NCBIfam RecQ family ATP-dependent DNA helicase 353 825 IPR004589 GO:0004386|GO:0006310
Vvi12g1353 1157 Pfam DEAD/DEAH box helicase 363 529 IPR011545 GO:0003676|GO:0005524
Vvi12g1353 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 543 IPR027417 -
Vvi12g1353 1157 ProSiteProfiles Rhodanese domain profile. 582 624 IPR001763 -
Vvi12g1353 1157 SMART RQC_2 775 886 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vvi12g1353 1157 MobiDBLite consensus disorder prediction 1019 1048 - -
Vvi12g1353 1157 Pfam RQC domain 772 889 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vvi12g1353 1157 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 548 816 IPR027417 -
Vvi12g1353 1157 Gene3D - 325 549 IPR027417 -
Vvi12g1353 1157 SMART ultradead3 357 558 IPR014001 -
Vvi12g1353 1157 FunFam Bloom syndrome, RecQ helicase 550 770 - -
Vvi12g1353 1157 Pfam Helicase conserved C-terminal domain 567 672 IPR001650 -
Vvi12g1353 1157 Pfam RecQ zinc-binding 684 766 IPR032284 -
Vvi12g1353 1157 ProSiteProfiles HRDC domain profile. 926 1008 IPR002121 GO:0003676
Vvi12g1353 1157 Gene3D - 773 883 IPR036388 -
Vvi12g1353 1157 Gene3D HRDC domain 925 1014 IPR044876 -
Vvi12g1353 1157 Gene3D - 550 768 IPR027417 -
Vvi12g1353 1157 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 369 542 IPR014001 -
Vvi12g1353 1157 FunFam ATP-dependent DNA helicase Q-like 4A 773 884 - -
Vvi12g1353 1157 Pfam HRDC domain 930 998 IPR002121 GO:0003676
Vvi12g1353 1157 CDD SF2_C_RecQ 550 682 - -
Vvi12g1353 1157 Coils Coil 217 237 - -
Vvi12g1353 1157 FunFam ATP-dependent DNA helicase RecQ 334 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1353 Vvi-Chr12 19728446 19745934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1353 581 696 Eukaryotic Initiation Factors Gene Family AT3G19760 24.138 1.62e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1353 K10901 - vvi:100245652 2278.44