Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1343 ATGGAGAAGTATGAGCTTGTGAAGGATATAGGATCTGGGAATTTTGGTGTGGCTAGGCTTATGAGGAACAAGGAAACCAAAGAGCTTGTTGCCATGAAGTACATTGAAAGAGGTCAAAAGATTGATGAGAATGTGGCCAGGGAGATCATAAATCACCGTTCCCTTCGGCATCCAAACATAATTCGATTCAAGGAGGTGGTTTTGACTCCCACACATCTTGCTATTGTTATGGAGTATGCTGCAGGAGGGGAGCTCTTTGAGCGAATCTGCAATGCTGGGAGGTTTAGCGAAGATGAGGCTAGGTATTTTTTTCAGCAGCTTATCTCTGGGGTCAGCTATTGCCATTCCATGCAAATATGCCATAGGGATTTGAAGCTGGAAAATACCTTGTTGGATGGAAGCCCTGCTCCACGCCTGAAAATCTGTGACTTTGGCTACTCTAAGTCATCTTTGCTGCATTCAAGACCCAAATCAACAGTTGGTACTCCAGCTTATATTGCACCAGAGGTTCTTTCTCGAAGAGAATATGATGGCAAGTTGGCAGATGTGTGGTCCTGTGGAGTAACTCTTTATGTTATGCTGGTGGGAGCGTACCCTTTTGAGGACCAAGAAGACCCAAAGAATTTTAGGAAAACCATCAGTCGTATAATGGCTGTTCAATACAAGATTCCCGATTATGTTCACATATCTCAAGATTGTAGGCATCTCCTTGCTCGCATATTTGTGGCAAATCCATCCAGGAGAGTCACTATCAAAGACATCAAGAATCACCCATGGTTTCTAAAGAACTTGCCCCGGGAACTCACAGAAGCAGCTCAAGCTCTCTATTACAGGAGAGAAAACCCTACCTTTTCCCTTCAAAGTATAGAGGACATCATGAAAATTGTGGATGAGGCCAAAACCCCTCCTCCAGTTTCCCGGTCAATTGGAGGCTTTGGCTGGGGAGGCGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGAAGAGGTGGAGACCGAGGAAGAAGAAGAGGACGAGTATGAGAAGCAAGTCAAAGAAGCCCATGCAAGTGGAGAAGTTCATGTCAGTTAA 1071 0.4454 MEKYELVKDIGSGNFGVARLMRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTISRIMAVQYKIPDYVHISQDCRHLLARIFVANPSRRVTIKDIKNHPWFLKNLPRELTEAAQALYYRRENPTFSLQSIEDIMKIVDEAKTPPPVSRSIGGFGWGGEEEEEEEEEKEEEVETEEEEEDEYEKQVKEAHASGEVHVS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1343 356 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vvi12g1343 356 PANTHER SERINE/THREONINE KINASE 2 321 - -
Vvi12g1343 356 SUPERFAMILY Protein kinase-like (PK-like) 2 294 IPR011009 -
Vvi12g1343 356 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vvi12g1343 356 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vvi12g1343 356 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1343 356 MobiDBLite consensus disorder prediction 341 356 - -
Vvi12g1343 356 MobiDBLite consensus disorder prediction 315 340 - -
Vvi12g1343 356 CDD STKc_SnRK2 3 259 - -
Vvi12g1343 356 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vvi12g1343 356 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1343 356 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vvi12g1343 356 MobiDBLite consensus disorder prediction 305 356 - -
Vvi12g1343 356 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1343 356 Coils Coil 316 350 - -
Vvi12g1343 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1343 Vvi-Chr12 19581975 19587379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1343 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.333 6.61e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vvi12g1343 Pkinase 1.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1343 K14498 - vvi:100259302 676.011