Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1334 ATGGAAGATGATGGCAGTTCGCTATATAATCTGTTGCTGGAATACGCACCCGGAGGAAGTCTGACGGGGTTGACGAAGAAGCGCAGAGGCAAATTATGGGAGTTTGAAGCTCGGCATTATGCAAGGATGATAATCAGAGGTTTACGCTACATGCATGAGAGGGGAGTGGTTCACTGCGATGTGAAGCCGGATAATGTACTTGTATTTCCCGGTGAAAATGGTGGGAATGTGGTGAAGCTTGCTGATTTTGGACTGGCTAGAAGGATTAATGTCGAGGAACAGATTTGGGTGCAGCAGCGGGGCTCCCCACCTTACATGTCGCCAGAGGCGTTAGCTTGGGAGGAATATGAGGCGCCCATGGATATATGGTCATGA 375 0.4933 MEDDGSSLYNLLLEYAPGGSLTGLTKKRRGKLWEFEARHYARMIIRGLRYMHERGVVHCDVKPDNVLVFPGENGGNVVKLADFGLARRINVEEQIWVQQRGSPPYMSPEALAWEEYEAPMDIWS* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1334 124 ProSiteProfiles Protein kinase domain profile. 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1334 124 ProSitePatterns Serine/Threonine protein kinases active-site signature. 56 68 IPR008271 GO:0004672|GO:0006468
Vvi12g1334 124 SMART serkin_6 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1334 124 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 124 - -
Vvi12g1334 124 Pfam Protein kinase domain 6 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1334 124 SUPERFAMILY Protein kinase-like (PK-like) 8 124 IPR011009 -
Vvi12g1334 124 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1334 Vvi-Chr12 19468994 19469368 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1334 3 124 MAP Kinase Kinase Kinase AT4G36950 46.721 6.19e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1334 Pkinase 1.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1334 - - vvi:100253456 262.307