Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1333 ATGCACGAGAGAGGATTGACTCACTGCGATCTGAAGCCGGATAACGTACTTGTTTTTCCCGGCAAAGATGGTGGGAATGTTGTTAAGATTGCTGATTTTGGAATGGCTAGAAGGGATGGAGAACAGGAAGTGCTTGAGGTCCGGTTCCGGGGCACCCCGGCTTACATGTCGCCCGAGTCTTTGGCTTTCGAAGAGTATGAGGCTCCAATGGATGTATGGTCACTAGGGTGCACAGTGGTTGAGTTGGTGACTGGACAACGCCCCTGGAATAGGTGTAAGGGTGTGAATGAGATAGTGGAGCATGTGGTAGTTAAGAGTGAAGTACCTAACATACCAAAATATCTATCCGAAAGTGGGAAGGATTTCCTTGTAAGATGTTTTGAGAGGGATCCGAGGAGAAGATGGGCGGCTGAGAAGCTGATGAATCACTCCTTTGTCGCCCCCATCCCTACCCAGATGGTAATGAATGACTTGCCTTCAAGTAGATGCTGTCATCCTCATCGTCCCCAAGCTTGTCTTCTTTGGTGGAGCGTTCTTGTACTTCATCGCTTCCAATTACTGGTTTGGTTTCTTCTACATGGCATTCCCTTCCTTCCAGGGTGCATTCTATTCCTTCAATGCTTCCAAATATTCCACTTCCTCCCGGATGCTGTGCGCCTTCGCCTGATTTCGAGAAGCCTTCTTATCGTGCATTGCTTTCGAGTCATTCTGTTCCTCCTCTATGGCAGTGATTTTGATCAATAA 744 0.4785 MHERGLTHCDLKPDNVLVFPGKDGGNVVKIADFGMARRDGEQEVLEVRFRGTPAYMSPESLAFEEYEAPMDVWSLGCTVVELVTGQRPWNRCKGVNEIVEHVVVKSEVPNIPKYLSESGKDFLVRCFERDPRRRWAAEKLMNHSFVAPIPTQMVMNDLPSSRCCHPHRPQACLLWWSVLVLHRFQLLVWFLLHGIPFLPGCILFLQCFQIFHFLPDAVRLRLISRSLLIVHCFRVILFLLYGSDFDQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1333 247 Gene3D Transferase(Phosphotransferase) domain 1 1 168 - -
Vvi12g1333 247 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 155 - -
Vvi12g1333 247 SUPERFAMILY Protein kinase-like (PK-like) 1 185 IPR011009 -
Vvi12g1333 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 6 18 IPR008271 GO:0004672|GO:0006468
Vvi12g1333 247 SMART serkin_6 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1333 247 Pfam Protein kinase domain 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1333 247 ProSiteProfiles Protein kinase domain profile. 1 146 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1333 Vvi-Chr12 19452793 19453536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1333 1 147 MAP Kinase Kinase Kinase AT5G67080 48.344 1.55e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1333 Pkinase 3.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1333 - - vvi:100266226 514.998