Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1332 ATGTTACCTGAAATTTTACTTGATGGTGGAAAAATTTTTCAGCAAGGTCAATGCTGGGAAGAAATTTGCCATGCTATGTTGGAAGCTCACCACCTGATATATATTATTGGGTGGTCCATATTCCACCCAGTCAAGCTTCTGAGAGAGCCAACAAAGCCAGTACCTGCTGGTGGAGAGCTTTCCCTTGGGGAATTGTTGAAATACAAGTCAGAAGAAGGAGTTCGAGTCCTTATGTTGATTTGGGATGATAAAACCTCACATGACAGATTACTTTTTAAAACAGAAGGTGTCATGCAAACTCACGATGAAGAAACACGAAAATTTTTTAAACACTCAGGTGTCCATTGTGTGCTTTCTCCTCGTTATGCCAGCAACAAGCTTAGCATTTTCAAGCAACAGGTAGTGGGAACCCTTTTTACACATCATCAGAAGTGTGTGCTTCTGGACACTCAAGCTCCTGGAAACAACAGGAAAATAACTGCTTTCATTGGTGGTCTAGATTTATGTGATGGCCGATATGACACTCCTGAGCACAGGCTCTTTAGTGATCTTGACACCGTATTTTCAAATGATTTTCACAATCCTACATTTCCATCTCGTGCCCGTGGCCCGAGGCAACCATGGCATGATTTACACTGTAAAGTTGAGGGTCCTGCTGCATACGATATAATGACAAATTTTGAACAAAGATGGAGAAAAGCAGCAAAATGGCGTGATTTCAGGCTCAAAAAGGTCACACATTGGCATGAAGATGCTTTGATAAGGCTAGACCGCATTTCATGGATAATCACTCCCTCCTCAGGTCCCACTGGTGATCATGCTGTACGCGTTACCACTGAAGAAGATCCAGAGACTTGGCATGTGCAGGTATTTCGGTCAATTGATTCAGGATCTGTGAGGGGATTCCCAAAGCTTGTTCAGGATGCTGAGGCACAGAATCTTGTTTGTGGGAAGAATCTGAAAATAGATAGGAGCATACATGCTGCTTATGTGAAAGCAATAAGATCGGCACAACACTTCATATACATAGAGAACCAGTATTTTCTTGGATCCGCATATCACTGGCCATCATACAAAAATGCAGGTGCAGATAACTTAATTCCTATGGAACTGGCCTTAAAAATTTCTAGCAAAATCAGTGCAAATGAACATTTCCGTGTCTATATAGTGGTACCAATGTGGCCAGAAGGTGTACCAACCAGTGCTTCCGTGCAGGAAATTCTTTTTTGGCAGGGACAAACAATGAGTATGATGTACCAGATTATTGGGCAGGCTATTCATAAAGCAGGCCTTTCTGATACACATCACCCACAGGATTATTTGAACTTTTACTGCCTTGGAAAACGTGAAGCTTCATCTACAGAAAGTTCTGCTCAAACAAGCAATTCTTCTGAGAACCGTGCATTGGGATTAGCTCAAAAGTTCCGCAGATTTATGATTTATGTCCATGCCAAAGGGATGATAGTTGATGATGAATATGTCTTGATAGGATCTGCTAACATTAACCAGAGATCCTTGGACGGTTCAAGGGATACTGAGATTGCTATGGGTGCTTATCAGCCATCATACACATGGTCAGGAAAGAAGACTCATCCACATGGCCAGGTATATGGCTATCGAATGTCTCTCTGGGCCGAGCACCTTGGCACCCTTGAGGATTCCTTCTGCCAACCAGAGTCTCTAGAATGCATCAGACAAGTGAACAGCATCGCCAAAAATAACTGGCAGATATATGCAGCAGACGAGAACAAGGAGATGACAGGGCATTTGATGCAATACCCAATTCAGGTGAGCAAAAATGGAAATGTAAGCACATTGCCCGGTCATGAGTGCTTTCCAGATGTAGGCGGTAAAGTTCTTGGATCACCCACTAATCTTCCCGACGCACTAACCACATGA 1899 0.4292 MLPEILLDGGKIFQQGQCWEEICHAMLEAHHLIYIIGWSIFHPVKLLREPTKPVPAGGELSLGELLKYKSEEGVRVLMLIWDDKTSHDRLLFKTEGVMQTHDEETRKFFKHSGVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLLDTQAPGNNRKITAFIGGLDLCDGRYDTPEHRLFSDLDTVFSNDFHNPTFPSRARGPRQPWHDLHCKVEGPAAYDIMTNFEQRWRKAAKWRDFRLKKVTHWHEDALIRLDRISWIITPSSGPTGDHAVRVTTEEDPETWHVQVFRSIDSGSVRGFPKLVQDAEAQNLVCGKNLKIDRSIHAAYVKAIRSAQHFIYIENQYFLGSAYHWPSYKNAGADNLIPMELALKISSKISANEHFRVYIVVPMWPEGVPTSASVQEILFWQGQTMSMMYQIIGQAIHKAGLSDTHHPQDYLNFYCLGKREASSTESSAQTSNSSENRALGLAQKFRRFMIYVHAKGMIVDDEYVLIGSANINQRSLDGSRDTEIAMGAYQPSYTWSGKKTHPHGQVYGYRMSLWAEHLGTLEDSFCQPESLECIRQVNSIAKNNWQIYAADENKEMTGHLMQYPIQVSKNGNVSTLPGHECFPDVGGKVLGSPTNLPDALTT* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1332 632 SUPERFAMILY Phospholipase D/nuclease 298 564 - -
Vvi12g1332 632 Gene3D Endonuclease Chain A 290 524 - -
Vvi12g1332 632 Gene3D Endonuclease Chain A 11 253 - -
Vvi12g1332 632 FunFam Phospholipase D delta 9 252 - -
Vvi12g1332 632 Pfam Phospholipase D Active site motif 138 172 IPR001736 GO:0003824
Vvi12g1332 632 PANTHER PHOSPHOLIPASE D 15 621 IPR015679 -
Vvi12g1332 632 Pfam PLD-like domain 331 514 IPR025202 -
Vvi12g1332 632 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 478 505 IPR001736 GO:0003824
Vvi12g1332 632 Pfam Phospholipase D C terminal 552 622 IPR024632 -
Vvi12g1332 632 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 137 172 IPR001736 GO:0003824
Vvi12g1332 632 SMART pld_4 137 172 IPR001736 GO:0003824
Vvi12g1332 632 SMART pld_4 478 505 IPR001736 GO:0003824
Vvi12g1332 632 SUPERFAMILY Phospholipase D/nuclease 16 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1332 Vvi-Chr12 19425239 19446960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1332 1 631 Phospholipase D Gene Family (Wang group) AT2G42010 56.231 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1332 K01115 - vvi:100261019 1298.11