Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1330 ATGGCTGATTTGAAAGCTTTTAAAAGCGAGATTCATGCTTTAACACAGATAAGGCACCGCAATATCGTCAAGCTTTATGGCTTTAGTTCATTTGCAGAGAACTCATTTTTGGTTTATGAGTTTATGGAAAAAGGGAGCCTGCGAAACATTCTAAGCAACGACGAAGAAGCAGAAATATTGGATTGGATGGTGAGGCTAAATGTTATTAAAGGCGTGGCTAAAGCTTTATCTTATATGCACCATGATTGCTTGCCTCCTCTAATTCATCGAGACATATCGAGCAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTCGGCACGGCTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCTTTTACGATGAAGGTGGATAATAAAACCGATGTTTATAGCTTTGGTGTTGTAACATTGGAAGTAATTATGGGAAGGCATCCTGGAGAACTCATCTCATCCCTGTTATCATCAGCGTCCTCATCATCCTCATCACCATCAATTGTGGACCATTGCCTATTGAATGATGTGATGGACCAGCGCCCCACACCTCCTGTGAATCAAGTGGCTGAGGAAGTAGTGGTTGCAGTGAAGTTGGCATTAGCGTGCTTGCGTGTTAATCCCCAGTCTCGGCCAACTATGCAACAAGTTGCTCGAGCACTTTCAACACATTGGCCACCATTTTCAAAACCGTTCCACACTATTACGTTGGGTGAGTTGCTGGCTCATGGTCATGGGGGTGAAACTAGCTGA 804 0.4254 MADLKAFKSEIHALTQIRHRNIVKLYGFSSFAENSFLVYEFMEKGSLRNILSNDEEAEILDWMVRLNVIKGVAKALSYMHHDCLPPLIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAFTMKVDNKTDVYSFGVVTLEVIMGRHPGELISSLLSSASSSSSSPSIVDHCLLNDVMDQRPTPPVNQVAEEVVVAVKLALACLRVNPQSRPTMQQVARALSTHWPPFSKPFHTITLGELLAHGHGGETS* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1330 267 Pfam Protein kinase domain 5 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1330 267 FunFam MDIS1-interacting receptor like kinase 2 42 244 - -
Vvi12g1330 267 SUPERFAMILY Protein kinase-like (PK-like) 4 238 IPR011009 -
Vvi12g1330 267 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1330 267 Gene3D Phosphorylase Kinase; domain 1 1 45 - -
Vvi12g1330 267 Gene3D Transferase(Phosphotransferase) domain 1 46 243 - -
Vvi12g1330 267 ProSitePatterns Tyrosine protein kinases specific active-site signature. 87 99 IPR008266 GO:0004672|GO:0006468
Vvi12g1330 267 PANTHER LEUCINE RICH REPEAT KINASE 2 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1330 Vvi-Chr12 19405011 19405915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1330 5 139 Receptor kinase-like Gene Family AT4G08850 64.444 7.64e-57 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1330 Pkinase 2.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1330 - - vvi:100255940 488.419