Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1327 ATGATCTTAACTTGGCATTCAATGGGGACTAGCAATTTCAGTTTGAAACAGTGTATTGACATTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCTAACAGGTTGGGTTGTTCCTGTGAAAAATCTTCACTCATCAGAAGATGGAGATATGGATGATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAGATAAGGCATCACAATATCGTCAAGCGTTATAGCTTCTATTCATTTGCAGAGAACTCGTTTCTGGTTTATGAGTTTATGGAAAATGGGAACTTGAGAAACATTCTAAGCAACGATGAAGAAGCAGAAAAATTAGATTGGATTGTGAGGCCAAATGTTGTTAAAGGCATGGCTAAAGCTCTATCCTATATGCACCATGATTGCTCACCTCCTATAATTCATCGAGACATATTGAGCAACAATGTTTTGTTAGATTCAGAATATGAAGCTTATGTTTCTGACTTCGGCACGACTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCTTTTACGATGAAGGTGGATAATAAAACCGATGTTTATAGCTTCGGTGTTGTAACATTGGAAGTAATTATGGGAAGGCATCTTGGAGAACTCATCTCGTCCCTATTATCATCAATGTCCTCATCATCACCATTATCATCAATTGTGGACCATCTCCTATTAAATGATGTGATGGACCAGCACCCCTCACCTCTAGTGAATCAAGTGGCTGAGGAAGTAGTGGTTGCAGTGAAGTTGGCATTAGCATTCTTGCGTGTTAATCCCCAGTCTCGGCCAACTATGCAACAAGTTGCTCGAGCACTCTCAACACAGTGGCGACCATTTTCAAAACCGTTCCACACTATTATGTTGGGTGAGTTGTTGGGTCACGGTCATGGGGGTGAAACTAGCTGA 954 0.4046 MILTWHSMGTSNFSLKQCIDIGGYGTVYKAELLTGWVVPVKNLHSSEDGDMDDLKAFKSEIHALTQIRHHNIVKRYSFYSFAENSFLVYEFMENGNLRNILSNDEEAEKLDWIVRPNVVKGMAKALSYMHHDCSPPIIHRDILSNNVLLDSEYEAYVSDFGTTRLLKSDSSNWTSFAGTFGYTAPELAFTMKVDNKTDVYSFGVVTLEVIMGRHLGELISSLLSSMSSSSPLSSIVDHLLLNDVMDQHPSPLVNQVAEEVVVAVKLALAFLRVNPQSRPTMQQVARALSTQWRPFSKPFHTIMLGELLGHGHGGETS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1327 317 Pfam Protein kinase domain 16 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1327 317 Gene3D Transferase(Phosphotransferase) domain 1 92 296 - -
Vvi12g1327 317 PANTHER LEUCINE RICH REPEAT KINASE 2 10 300 - -
Vvi12g1327 317 Gene3D Phosphorylase Kinase; domain 1 7 91 - -
Vvi12g1327 317 SUPERFAMILY Protein kinase-like (PK-like) 5 288 IPR011009 -
Vvi12g1327 317 ProSiteProfiles Protein kinase domain profile. 13 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1327 317 FunFam MDIS1-interacting receptor like kinase 2 92 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1327 Vvi-Chr12 19344563 19346864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1327 9 189 Receptor kinase-like Gene Family AT4G08850 54.348 1.82e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1327 Pkinase 2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1327 - - vvi:100255940 459.144