Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1326 ATGCTGACACACCTGAACATCTCCAACAACAATATTTCTGGTGTTATACCGCCTCAACTTGGGAAAGCAATTCAACTGCAACAACTTGATCTCTCCGCCAATCGTTTGAGTGGGACAATCCCAAAAGAATTGGGTATGTTTCCCTTATTGTTCAAATTGTTGCTAGGCAACAACATTCTTTCAGGAAATATTCCTTTGGAATTGGGAAACTTATCCAATCTTGAAATCCTTGACTTGGCATCAAACAGCTTAAGCGGTCCAATTCCCAAACAACTAGGGAACTTCTGGAAATTATCATCCTTGAACTTGAGCGAGAATAGATTTGTGGACATCATTCCCGACGAAATTGGAAAGATGCATCATCTTGAAAGTCTCGATCTTAGTCAAAATATGTTGACAGGAGAGATACCACCGCTGCTAGATCTATTTGCAATATGGGGCCATGATGGGGAATTGTTGTATGAGCAAATCATACAAGGGACTGACAATTTCAGTTCGAGACAGTGTATTGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGTCGGATTGTTGCTGTTAAAAAGCTTCACTCATCAGAAGATGGAGATATGGCTGATTTAAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAAATAAGGCATCGCAATATCGTCAAGCTTTATGGCTTCAGTTCATTTGCAGAGAACTCGTTTTTGGTTTATGAGTTTATGGAAAAGGGGAGTTTGCAAAACATTCTATGCAACAACGAAGAAGCAGAAAGATTAGATTGGATTGTGAGGCTAAACGTTATTAAAGGCGTGGCTAAAGCTTTATCCTATATGCACCATGATTGCTCACCTCCTGTAATTCATCGAGACATATCGAGCAATAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTCGGCACGGCTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCTTACACGATGAAGGTGGATAATAAAACTGATGTTTATAGCTTCGGTGTTGTGACATTGGAAGTAATTATGGGAAGGCATCCTGGAGAACTCATCTCATCCCTGTTATCATCTGCGTCCTCATCATCCTCATCACCATCAACCATCCACCACTTACCACTGAATGATGCGATGGACCAGCGCCCATCACCTCCTGTGAATCAACTGGCAGAGGAAGTAGTGGTTGCAACGAAGTTAGCATTTGAATGCTTGCATGTTAATCCCCAATTTCGGCCAACTATGCAACAAGTTGCTCGAGCACTCTCAACACAGTGCCCACCATTGTCAAAATCGTTTTCCATGATTATGTTGGGTGAGCTGCTGGGTCATGGTCATGGGGGTGAAACTAGCTGA 1407 0.4165 MLTHLNISNNNISGVIPPQLGKAIQLQQLDLSANRLSGTIPKELGMFPLLFKLLLGNNILSGNIPLELGNLSNLEILDLASNSLSGPIPKQLGNFWKLSSLNLSENRFVDIIPDEIGKMHHLESLDLSQNMLTGEIPPLLDLFAIWGHDGELLYEQIIQGTDNFSSRQCIGTGGYGTVYKAELPTGRIVAVKKLHSSEDGDMADLKAFKSEIHALTQIRHRNIVKLYGFSSFAENSFLVYEFMEKGSLQNILCNNEEAERLDWIVRLNVIKGVAKALSYMHHDCSPPVIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYTMKVDNKTDVYSFGVVTLEVIMGRHPGELISSLLSSASSSSSSPSTIHHLPLNDAMDQRPSPPVNQLAEEVVVATKLAFECLHVNPQFRPTMQQVARALSTQCPPLSKSFSMIMLGELLGHGHGGETS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1326 468 Gene3D Phosphorylase Kinase; domain 1 145 242 - -
Vvi12g1326 468 ProSitePatterns Tyrosine protein kinases specific active-site signature. 288 300 IPR008266 GO:0004672|GO:0006468
Vvi12g1326 468 MobiDBLite consensus disorder prediction 378 400 - -
Vvi12g1326 468 PANTHER LEUCINE RICH REPEAT KINASE 2 141 447 - -
Vvi12g1326 468 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 1 144 - -
Vvi12g1326 468 Pfam Leucine rich repeat 72 132 IPR001611 GO:0005515
Vvi12g1326 468 Gene3D Transferase(Phosphotransferase) domain 1 243 447 - -
Vvi12g1326 468 Pfam Leucine Rich Repeat 2 20 IPR001611 GO:0005515
Vvi12g1326 468 ProSiteProfiles Protein kinase domain profile. 164 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1326 468 ProSiteProfiles Leucine-rich repeat profile. 121 143 IPR001611 GO:0005515
Vvi12g1326 468 FunFam MDIS1-interacting receptor like kinase 2 243 445 - -
Vvi12g1326 468 Gene3D Ribonuclease Inhibitor 1 144 IPR032675 -
Vvi12g1326 468 ProSitePatterns Protein kinases ATP-binding region signature. 170 193 IPR017441 GO:0005524
Vvi12g1326 468 FunFam Leucine-rich repeat receptor protein kinase MSP1 132 242 - -
Vvi12g1326 468 SUPERFAMILY L domain-like 2 140 - -
Vvi12g1326 468 PRINTS Leucine-rich repeat signature 71 84 - -
Vvi12g1326 468 PRINTS Leucine-rich repeat signature 26 39 - -
Vvi12g1326 468 Pfam Protein kinase domain 166 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1326 468 SUPERFAMILY Protein kinase-like (PK-like) 149 439 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1326 Vvi-Chr12 19288324 19290237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1326 2 336 Receptor kinase-like Gene Family AT4G08850 42.667 3.94e-82 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1326 Pkinase 4.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1326 - - vvi:100855076 604.749