Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1323 ATGCTCACAAACCTGAACTTCTCCAACAACAAAATTTCTAGTACTATACCGCCTCAACTTGGGAAAACAATTCAACTACAACAACTTGATCTCTCCTCAAATCATCTAATTGGGAAGATCCCAAAAGAATTGGGTATGTTTCCCTTATTGTTCAAATTATTGCTAGGCAACAACAAACTTTCAGGAAGTATTCCTCTAGAATTGGGAAACTTATCCAATCTTGAAATCCTTGACTTGGCTTCGAGACGGTGTATTGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGTCGGGTTGTTGTTGCTGTGAAAAAACTTCACTCATCAGAAGATGGAGATATGGCTCATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAAATAAGGCATCACAATATCATCAAGCTTTATGGCTTCAGTTCATTTGCAGAGAACTCGTTTTTGGTTTATGAGTTTATGGAAAAAGGGAGCTTGAGAAACATTCTAAGCAACGACCAAGAAGCAGAAAAATTAGATTGGATTGTGAGGCTGAATGTTGTTAAAGCTCATGTATCTGACTTGGGCACGGCTAGGCTTTTGAAGTTGGACTCATCTAATTGGAATTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCTTACACGATGAAGGTGGATAATAAAACTGATGTCTATAGCTTTGGAGTGGTAACATTGGAAGTAATTATGGGAAGACATCCTGGTGAACTCATCTCATGGTTGTCATCATCAGCTTCCTCATCCTCATCAATATCAACCGTAGACTACATACTGCTGAATGATGTGATGGACCAACACCCATCACCTCCTGTGAATCAAGTGGCTGAGGAAGTAGCACTTGCAGTGAAGTTAACGTTTGCATGTTTGCATGTTAAACCCCAATCTCGGCCAACTATGCAACAAATTGCTTGA 954 0.3994 MLTNLNFSNNKISSTIPPQLGKTIQLQQLDLSSNHLIGKIPKELGMFPLLFKLLLGNNKLSGSIPLELGNLSNLEILDLASRRCIGTGGYGTVYKAELPTGRVVVAVKKLHSSEDGDMAHLKAFKSEIHALTQIRHHNIIKLYGFSSFAENSFLVYEFMEKGSLRNILSNDQEAEKLDWIVRLNVVKAHVSDLGTARLLKLDSSNWNSFAGTFGYTAPELAYTMKVDNKTDVYSFGVVTLEVIMGRHPGELISWLSSSASSSSSISTVDYILLNDVMDQHPSPPVNQVAEEVALAVKLTFACLHVKPQSRPTMQQIA* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1323 317 ProSiteProfiles Protein kinase domain profile. 79 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1323 317 SUPERFAMILY Protein kinase-like (PK-like) 82 316 IPR011009 -
Vvi12g1323 317 Gene3D Ribonuclease Inhibitor 1 89 IPR032675 -
Vvi12g1323 317 Gene3D Phosphorylase Kinase; domain 1 90 160 - -
Vvi12g1323 317 Gene3D Transferase(Phosphotransferase) domain 1 164 317 - -
Vvi12g1323 317 PANTHER LEUCINE RICH REPEAT KINASE 2 2 81 - -
Vvi12g1323 317 Pfam Protein kinase domain 83 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1323 317 Pfam Protein kinase domain 188 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1323 317 SUPERFAMILY L domain-like 2 87 - -
Vvi12g1323 317 Pfam Leucine Rich repeats (2 copies) 2 41 IPR025875 -
Vvi12g1323 317 ProSitePatterns Protein kinases ATP-binding region signature. 85 109 IPR017441 GO:0005524
Vvi12g1323 317 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 87 - -
Vvi12g1323 317 FunFam Leucine-rich repeat receptor protein kinase MSP1 76 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1323 Vvi-Chr12 19256260 19258057 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1323 2 98 Receptor kinase-like Gene Family AT4G08850 36.082 5.52e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1323 Pkinase 3.5e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1323 - - vvi:100855076 380.563