Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1320 ATGGCCTTTGAATATTCTTCATCCTACTCCTTACTCTCTCGACTCTTTATCACTCCTTACTACTTCATATTTCTCCTTGTCCTTCTATACTCAATATCATCATTCCATGTCACTTCTATATCTGCCTCTACACCTACCACTTCTCTTTCAAAAGTTGAAAAAGATCAAGAAAGACTCGCTCTTCTAACATGGAAAGCCAGTCTTGATAATCAAACCCAATCTTTCCTCTCTTCTTGGTCTGGACGCAATTCTTGCTATCATTGGTTTGGATTAACTTGTCACAAGTCAGGAAGTGTCTCCAATTTAGAACTTGACAATTGCGGTTTGAGAGGTACACTCCACAATCTCAATTTCTCATCACTCCCTAACCTTCTCACTCTTAATCTTTATAACAACTCCCTTTATGGAACCATTCCAATCAACATTGGTAATCTTTCCAAACGAATCACAAATCTTAACTTTGCTTTCAATCATTTCACTGGTGTAATATCTCCCCAACTTGGATTTCTAACATCTCTTAGTGTTCTAGCATTGTCTTCTAATAATTTTAGAGGCCCAATTCCTCCTTCCATAGGTAACTTGAGGAACTTAACCACTTTATACCTTCATACTAACAAACTATCTGGTTCTATTCCTCAAGAAATTGGATTGTTGACATCACTTAATGATCTTGAGTTGGCAACTAATAGTCTCACTGGTTCAATCCCTCCATCCATAGGAAACTTGAGAAACTTAACCACTCTATATCTTTTTGAGAACGAGCTTTCTGGTTTCATCCCTCAAGAAATTGGATTGTTAAGATCTCTTAATGATCTTGAATTGTCAACTAACAATCTCACTGGTCCAATCCCTCCTTCCATAGGAAACCTAAGGAACTTAACCACTTTGCATCTTTTCAAGAATAAGCTTTCTGGTTCCATCCCCCAAGAAATTGGATTGTTAAAATCTCTTAATGATCTTCAATTGTCAACTAACAATCTCACTGGTCCAATCCCTCCTTCCATAGGTAACTTGAGGAACTTAACCACTTTATACCTTCATACAAACAAACTATCCGATTCTATTCCTCAAGAAATTGGATTGTTGACATCACTTAATGATCTTGAGTTGGCAACTAATAGTCTCACTGGTCCGATCCCTCCATCCATTGGAAACTTGAGAAATTTAACCACTTTATATCTTTTTGAGAACGAGCTTTCTGGTTTCATCCCTCAAGAAATTGGATTGTTAAGATCTCTTAATGATCTTCAATTGTCATTTAACAATCTCATCGGTCCAATCCCTCCTTCGATAGGTAACTTGAGGAACTTAACGACTTTGTACCTTCATACAAACAAACTATCTGGTTCTATTCCTCAAGAAATTGGATTGTTGACATCACTTATAGATCTTGAGTTGGAAACTAATAGTCTCACTGGTTCGATCCCTCCATCCATTGGAAACTTGAGAAATTTAACCACTTTATATCTTTTTGAGAACAAGCTTTCTGGTTCCATCCCTCAAGAAATTGGATTGTTGACATCACTTTATGATCTTGACTTGGCAGCTAATAGTCTCAGTGGTCCAATCCCTCCATCCATAGGAAACTTGTCCAGCTTAACCTTTTTGTTCCTTGATCACAACAAGCTTAGTGGTGCGATTCCTCTTGAAATGAATAATATCACTCATTTGAAATCTTTACAGTTAGTTGAGAATAACTTCATTGGCCAACTACCACAAGAGATATGCCTTGGTAGTGTTCTTGAAAACTTTACAGCCTCTGGAAATCATTTCACTGGTCCTATTCCAAAAGGCTTGAAAAATTGCACTAGCTTATTCAGAGTTAGGCTTGAAAGAAATCAATTGACAGGGGACATAGCCGAAAGTTTTGGTGTGTACCCAACTCTAAATTATATTGATCTAAGCAGCAACAATTTTTATGGTGAGCTTTCTGAGAAATGGGGGCAGTGCCACATGCTCACAAACCTGAACATCTCCAACAACAATATTTCTGGTGCTATACCGCCTCAACTTGGGAAAGCAACTCAGCTGCGACAGCTTGATCTCTCCGCCAATCATCTAAGTGGGAAGATCCTGAAAGAGTTGGGTATGTTGCCATTATTGTTCAAATTGTTATTAGGAAACAACAGTCTTTCAGGTAGTATTCCTTTGGAATTGGGAAACTTATCCAATCTTGAAATTCTTGACTTGGCATCAAACAACATAAGCGGTTCAATTCCCAAACAACTGGGAAACTTCTGGAAATTAAGGTCCTTCAACTTGAGCGAGAATAGATTTGTGGATAGCATTCCCGATGAAATTGGAAAGTTGCATCATCTTGAAAGTCTCGATCTTAGTCAAAATATGCTAATAGGAGAGATACCACCGCTACTTGGAGAATTACAGTACCTGGAAACGTTGAATCTCTCCCATAACGGGCTCTCTGGCACCATCCCACACACGTTTGATGATCTGATAAGCCTGACAGTTGTTGATATATCCTACAATCAGTTGGAAGGTCCTCTCCCCAACATCAAAGCCTTCGCTCCATTTGAGGCATTCAAAAATAATAAAGGTCTGTGTGGTAATAATGTCACTCATCTCAAGCCATGCAGTGCTAGTCGAAAGAAGGCCAACAAGTTTTCTGTTTTGATAGTAATACTCCTACTTGTGAGCAGTCTATTGTTCTTACTTGCTTTTGTTATTGGCATTTTTTTTCTTTTCCAAAAATTGAGGAAGAGAAAAAACAAGTCTCCAGAAGCAGATGTCGAAGATCTATTTGCAATATGGGGCCATGATGGGGAATTGTTGTATGAGCACATCATACAGGGGACCGACAATTTCAGTTCGAAACAGTGTATTGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGTCGGGTTGTTGCTGTGAAAAAGCTTCACTCATCAGAAGATGGAGATATGGCTGATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAGATAAGGCACCGCAACATCGTCAAGCTTTATGGCTTCAGTTCATTTGCAGAGAACTCATTTTTGGTTTATGAGTTTATGGAAAAGGGGAGTTTGCAAAACATTCTATGCAATGACGAAGAAGCAGAAAGATTAGATTGGATTGTGAGGCTAAACGTTATTAAAGGCGTGGCTAAAGCTTTATCGTATATGCACCATGATTGCTCACCTCCTGTAATTCATCGAGACATATCGAGCAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTCGGCACGGCTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACAGCTCCAGAACTTGCTTACACAATGAAGGTGGATAATAAAACCGATGTTTACAGCTTCGGTGTTGTGACATTAGAAGTAATTATGGGAAGGCATCCCGGAGAGCTTATCTCATCCCTGTTATCATCAGCGTCCTCCTCATCTGCATCACCATCAACGGTCGGCCATTTCCTGCTGAATGATGTGATAGACCAGCGCCCCTCACCTCCTGTGAATCAAGTGGCAGAGGAAGTAGTGGTTGCAGTGAAGTTGGCATTTGCATGTTTGTGCGTTAATCCCCAATCTCGGCCAACTATGCAACAAGTTGCTCGAGCACTCTCAAAACAGTGGCCACCATTGCCAAAACCGTTTTCTGTGATTACGTTGGGTGAGCTGCTGGGTCATGGTCATGGGGATGAAACTAGCTGA 3738 0.397 MAFEYSSSYSLLSRLFITPYYFIFLLVLLYSISSFHVTSISASTPTTSLSKVEKDQERLALLTWKASLDNQTQSFLSSWSGRNSCYHWFGLTCHKSGSVSNLELDNCGLRGTLHNLNFSSLPNLLTLNLYNNSLYGTIPINIGNLSKRITNLNFAFNHFTGVISPQLGFLTSLSVLALSSNNFRGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLTSLNDLELATNSLTGSIPPSIGNLRNLTTLYLFENELSGFIPQEIGLLRSLNDLELSTNNLTGPIPPSIGNLRNLTTLHLFKNKLSGSIPQEIGLLKSLNDLQLSTNNLTGPIPPSIGNLRNLTTLYLHTNKLSDSIPQEIGLLTSLNDLELATNSLTGPIPPSIGNLRNLTTLYLFENELSGFIPQEIGLLRSLNDLQLSFNNLIGPIPPSIGNLRNLTTLYLHTNKLSGSIPQEIGLLTSLIDLELETNSLTGSIPPSIGNLRNLTTLYLFENKLSGSIPQEIGLLTSLYDLDLAANSLSGPIPPSIGNLSSLTFLFLDHNKLSGAIPLEMNNITHLKSLQLVENNFIGQLPQEICLGSVLENFTASGNHFTGPIPKGLKNCTSLFRVRLERNQLTGDIAESFGVYPTLNYIDLSSNNFYGELSEKWGQCHMLTNLNISNNNISGAIPPQLGKATQLRQLDLSANHLSGKILKELGMLPLLFKLLLGNNSLSGSIPLELGNLSNLEILDLASNNISGSIPKQLGNFWKLRSFNLSENRFVDSIPDEIGKLHHLESLDLSQNMLIGEIPPLLGELQYLETLNLSHNGLSGTIPHTFDDLISLTVVDISYNQLEGPLPNIKAFAPFEAFKNNKGLCGNNVTHLKPCSASRKKANKFSVLIVILLLVSSLLFLLAFVIGIFFLFQKLRKRKNKSPEADVEDLFAIWGHDGELLYEHIIQGTDNFSSKQCIGTGGYGTVYKAELPTGRVVAVKKLHSSEDGDMADLKAFKSEIHALTQIRHRNIVKLYGFSSFAENSFLVYEFMEKGSLQNILCNDEEAERLDWIVRLNVIKGVAKALSYMHHDCSPPVIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYTMKVDNKTDVYSFGVVTLEVIMGRHPGELISSLLSSASSSSASPSTVGHFLLNDVIDQRPSPPVNQVAEEVVVAVKLAFACLCVNPQSRPTMQQVARALSKQWPPLPKPFSVITLGELLGHGHGDETS* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1320 1245 SUPERFAMILY Protein kinase-like (PK-like) 928 1216 IPR011009 -
Vvi12g1320 1245 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 479 1218 - -
Vvi12g1320 1245 Gene3D Ribonuclease Inhibitor 410 482 IPR032675 -
Vvi12g1320 1245 Gene3D Ribonuclease Inhibitor 483 556 IPR032675 -
Vvi12g1320 1245 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1065 1077 IPR008266 GO:0004672|GO:0006468
Vvi12g1320 1245 Pfam Leucine rich repeat 772 831 IPR001611 GO:0005515
Vvi12g1320 1245 Pfam Protein kinase domain 942 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1320 1245 Gene3D Ribonuclease Inhibitor 53 212 IPR032675 -
Vvi12g1320 1245 Gene3D Ribonuclease Inhibitor 213 306 IPR032675 -
Vvi12g1320 1245 ProSiteProfiles Leucine-rich repeat profile. 340 362 IPR001611 GO:0005515
Vvi12g1320 1245 ProSitePatterns Protein kinases ATP-binding region signature. 947 970 IPR017441 GO:0005524
Vvi12g1320 1245 Gene3D Phosphorylase Kinase; domain 1 903 1019 - -
Vvi12g1320 1245 ProSiteProfiles Leucine-rich repeat profile. 772 794 IPR001611 GO:0005515
Vvi12g1320 1245 FunFam Uncharacterized protein 268 423 - -
Vvi12g1320 1245 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Vvi12g1320 1245 SMART LRR_sd22_2 770 789 - -
Vvi12g1320 1245 SMART LRR_sd22_2 434 466 - -
Vvi12g1320 1245 SMART LRR_sd22_2 722 748 - -
Vvi12g1320 1245 SMART LRR_sd22_2 506 532 - -
Vvi12g1320 1245 SMART LRR_sd22_2 338 370 - -
Vvi12g1320 1245 SMART LRR_sd22_2 194 226 - -
Vvi12g1320 1245 SUPERFAMILY L domain-like 56 311 - -
Vvi12g1320 1245 FunFam Uncharacterized protein 525 866 - -
Vvi12g1320 1245 SUPERFAMILY L domain-like 610 841 - -
Vvi12g1320 1245 FunFam Probable leucine-rich repeat receptor-like protein kinase At1g35710 54 212 - -
Vvi12g1320 1245 SMART LRR_typ_2 121 145 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 194 218 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 386 410 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 242 266 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 170 193 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 434 458 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 722 746 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 290 314 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 338 362 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 482 506 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 530 554 IPR003591 -
Vvi12g1320 1245 SMART LRR_typ_2 770 794 IPR003591 -
Vvi12g1320 1245 ProSiteProfiles Protein kinase domain profile. 941 1228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1320 1245 FunFam Leucine-rich repeat receptor protein kinase MSP1 904 1019 - -
Vvi12g1320 1245 Gene3D Ribonuclease Inhibitor 307 407 IPR032675 -
Vvi12g1320 1245 SUPERFAMILY RNI-like 307 639 - -
Vvi12g1320 1245 Gene3D Transferase(Phosphotransferase) domain 1 1020 1221 - -
Vvi12g1320 1245 Gene3D Ribonuclease Inhibitor 557 866 IPR032675 -
Vvi12g1320 1245 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 425 524 - -
Vvi12g1320 1245 ProSiteProfiles Leucine-rich repeat profile. 436 458 IPR001611 GO:0005515
Vvi12g1320 1245 FunFam MDIS1-interacting receptor like kinase 2 1020 1222 - -
Vvi12g1320 1245 Pfam Leucine rich repeat N-terminal domain 55 93 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1320 Vvi-Chr12 19221842 19226262 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1320 56 715 Receptor kinase-like Gene Family AT4G08850 40.060 2.13e-127 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1320 Pkinase 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1320 - - vvi:100855076 2067.74