Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1318 ATGCACCATGATTGCTCACCTCCTGTAATTCATCAAGACATATCGAGCAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTCGGCACGGCTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACAGCTCCAGAACTTGCTTACACAATGAAGGTGGATAATAAAACCGATGTTTATAGCTTCGGTGTTGTGACATTAGAAGTAATTATGGGAAGGCATCCCGGAGAGCTTATCTCATCCCTGTTATCATCAGCGTCCTCCTCATCTGCATCACCATCAACGGTCGGCCATTTCCTGCTGAATGATGTGATAGACCAGCGCCCCTCACCTCCTGTGAATCAAGTGGCAGAGGAAGTAGTGGTTGCAGTGAAGTTGGCATTTGCATGTTTGTGTGTTAATCCCCAATCTCGGCCAACTATGCAACAAGTTGCTCGAGCACTCTCAAAACAGTGGCCACTATTGTCAAAACCGTTTTCTGTGATTACGTTGGGTGAGCTGCTGGATCATGGTCATGGGGATGAAACTAGCTGA 570 0.4456 MHHDCSPPVIHQDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYTMKVDNKTDVYSFGVVTLEVIMGRHPGELISSLLSSASSSSASPSTVGHFLLNDVIDQRPSPPVNQVAEEVVVAVKLAFACLCVNPQSRPTMQQVARALSKQWPLLSKPFSVITLGELLDHGHGDETS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1318 189 SUPERFAMILY Protein kinase-like (PK-like) 1 160 IPR011009 -
Vvi12g1318 189 SMART serkin_6 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1318 189 Pfam Protein kinase domain 5 157 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1318 189 ProSitePatterns Tyrosine protein kinases specific active-site signature. 9 21 IPR008266 GO:0004672|GO:0006468
Vvi12g1318 189 FunFam Leucine-rich repeat receptor-like protein kinase 1 169 - -
Vvi12g1318 189 ProSiteProfiles Protein kinase domain profile. 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1318 189 Gene3D Transferase(Phosphotransferase) domain 1 1 173 - -
Vvi12g1318 189 PANTHER LEUCINE RICH REPEAT KINASE 2 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1318 Vvi-Chr12 19195348 19196024 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1318 1 162 Receptor kinase-like Gene Family AT5G65700 43.452 1.57e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1318 Pkinase 3.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1318 - - vvi:100855151 348.206