Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1313 ATGAATAATATCACTCATTTGAAATCTTTGCAGATAGGTGAGAATAACTTCACTGGCCACCTACCACAAGAGATATGCCTTGGTAATGCTCTTGAAAAAGTTTCAGCCCAAAGGAACCATTTCACTGGTCCTATTCCAAAGAGCTTGAAAAATTGCACTAGCTTATTCAGAGTTAGGCTTGAAAATAACCAACTTACTGGAGACATAGCCGAAAGTTTTGGTGTATACCCTAATCTAAATTATATTGATCTGAGCAGTAACAATTTGTATGGTGACCTTTCTGAGAAATGGGGGGAGTGCCACATGCTCACAAACCTGAACATCTCCAATAACAAAATTTCTGGTGCTATACCACCTCAACTTGGGAAAGCAATTCAACTGCAACAACTTGATCTCTCCTCAAATCATCTAATTGGGAAGATCCCAAAAGAATTGGGTATGCTTCCTTTACTGTTCAAGTTGTTGCTAGGCAACAACAAACTTTCAGGAAGTATTCCTCTGGAATTGGGAAACTTATCCAATCTTGAAATCCTTGACTTGGCATCAAACAACTTAAGCGGTCCAATTCCCAAGCAACTGGGAAACTTCTGGAAATTATGGTCCTTGAACTTGAGCGAGAATAGATTTGTGGATAGCATTCCTGACGAAATTGGAAAGATGCATCATCTTCGAAGTCTCGATCTTAGTCAAAATATGTTGACAGGAGAGATGCCACCGCTGCTTGGAGAATTACAGAACCTGGAAACGTTGAATCTCTCCCACAATGGGCTATCTGGTACCATCCCACACACGTTTGATGATTTGATAAGTTTGACAGTTGCTGATATATCCTACAATCAATTGGAAGGTCCTCTCCCAAACATCAAAGCCTTTGCTCCATTTGAGGCATTCAAAAATAATAAAGGTCTGTGTGGTAATAATGTCACTCATCTCAAGCCATGTAGTGCTAGTCGAAAGAAGGCCAACAAGTTTTCTATTTTGATCATAATACTCCTCATTGTGAGCAGTCTATTGTTCTTATTTGCTTTTGTTATTGGCATTTTTTTTCTTTTCCAAAAATTGAGGAAGAGAAAAACCAAATCTCCAGAAGCAGATGTTGAAGATCTATTTGCAATATGGGGCCATGATGGGGAATTGCTGTATGAACACATCATACAGGGGACCGACAATTTCAGTTCGAAGCAGTGTATTGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGTCGGGTTGTTGCTGTGAAAAAGCTTCACTCATCACAAGATGGAGATATGGCTGATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAGATAAGGCATCGCAGTATCGTCAAGCTTTATGGCTTCAGTTTATTTGCAGAGAACTCATTTTTGGTTTATGAGTTTATGGAAAAGGGAAGCTTGCGAAACATTCTAAGAAACGACGAAGAAGCAGAAAAATTAGATTGGATTGTGAGGCTAAACGTTGTTAAAGGCGTGGCTAAAGCTTTATCTTATATGCACCATGATTGCTCACCTCCTATAATTCATCGAGACATATCAAGTAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTCGGCACAGCTAGGCTTTTAAAGTCGGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCATACTCGATGAAGGTGGATAATAAAACCGATGTTTATAGTTTCGGTGTTGTAACATTGGAAGTAATTATGGGGAGGCATCCTGGAGAACTCATCTCATCCCTGTTATCATCAGCGTCCTCCTCATCTACATCACCATCAACTGCCGGCCATTTCCTGTTGAATGATGTGATAGACCAGCGCCCCTCACCTCCTGTGAATCAAGTGGCAAAGGAAGTAGAGGTTGCAGTGAAGTTGGCATTTGCATGCTTGCGTGTTAATCCCCAATCTCGGCCAACTATGCAACAAGTGTACTACCGTGAAGAGACCCATTCTGTTCCTGTTGAGATGACAGAGGGGAAATGTGATGTCCTTGCAACCTTTGGAACTTATTTTTGTTTGAAGGGTCCCTCAAGCAGTAGCCAAGTGGGCTACTGA 2112 0.4072 MNNITHLKSLQIGENNFTGHLPQEICLGNALEKVSAQRNHFTGPIPKSLKNCTSLFRVRLENNQLTGDIAESFGVYPNLNYIDLSSNNLYGDLSEKWGECHMLTNLNISNNKISGAIPPQLGKAIQLQQLDLSSNHLIGKIPKELGMLPLLFKLLLGNNKLSGSIPLELGNLSNLEILDLASNNLSGPIPKQLGNFWKLWSLNLSENRFVDSIPDEIGKMHHLRSLDLSQNMLTGEMPPLLGELQNLETLNLSHNGLSGTIPHTFDDLISLTVADISYNQLEGPLPNIKAFAPFEAFKNNKGLCGNNVTHLKPCSASRKKANKFSILIIILLIVSSLLFLFAFVIGIFFLFQKLRKRKTKSPEADVEDLFAIWGHDGELLYEHIIQGTDNFSSKQCIGTGGYGTVYKAELPTGRVVAVKKLHSSQDGDMADLKAFKSEIHALTQIRHRSIVKLYGFSLFAENSFLVYEFMEKGSLRNILRNDEEAEKLDWIVRLNVVKGVAKALSYMHHDCSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYSMKVDNKTDVYSFGVVTLEVIMGRHPGELISSLLSSASSSSTSPSTAGHFLLNDVIDQRPSPPVNQVAKEVEVAVKLAFACLRVNPQSRPTMQQVYYREETHSVPVEMTEGKCDVLATFGTYFCLKGPSSSSQVGY* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1313 703 PRINTS Leucine-rich repeat signature 223 236 - -
Vvi12g1313 703 PRINTS Leucine-rich repeat signature 244 257 - -
Vvi12g1313 703 FunFam Leucine-rich repeat receptor protein kinase MSP1 354 469 - -
Vvi12g1313 703 FunFam Uncharacterized protein 1 316 - -
Vvi12g1313 703 ProSiteProfiles Protein kinase domain profile. 391 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1313 703 Pfam Leucine rich repeat 222 281 IPR001611 GO:0005515
Vvi12g1313 703 PANTHER LEUCINE RICH REPEAT KINASE 2 1 665 - -
Vvi12g1313 703 ProSitePatterns Tyrosine protein kinases specific active-site signature. 515 527 IPR008266 GO:0004672|GO:0006468
Vvi12g1313 703 ProSitePatterns Protein kinases ATP-binding region signature. 397 420 IPR017441 GO:0005524
Vvi12g1313 703 Pfam Protein kinase domain 392 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1313 703 Gene3D Phosphorylase Kinase; domain 1 353 469 - -
Vvi12g1313 703 FunFam MDIS1-interacting receptor like kinase 2 470 671 - -
Vvi12g1313 703 Gene3D Transferase(Phosphotransferase) domain 1 470 679 - -
Vvi12g1313 703 SUPERFAMILY L domain-like 3 291 - -
Vvi12g1313 703 Gene3D Ribonuclease Inhibitor 1 316 IPR032675 -
Vvi12g1313 703 SUPERFAMILY Protein kinase-like (PK-like) 377 666 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1313 Vvi-Chr12 19143843 19146503 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1313 3 563 Receptor kinase-like Gene Family AT4G08850 50.263 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1313 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1313 - - vvi:100256081 1254.97