Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1310 ATGGAACATATGATAACCAAGGGAATTCTTGTTGGCGTGGGAAGTTCCGGCAAGGTGCACATGGCATTCTCCAATGGCCGCCTACTAGCTCTGAAATCTTGGTGTTCTTCTTGTTATTCTTCACTTCAAAAGGAGGAAGAGATTCTTCATAGACTTGGACACTGCCCAGATATTGTTGACTACTTTGGAGGTTACTCAACCCAGGAAGGCAATGGCGTTTTGGTCTATAATTTAGTTCTTGAGTATGCACCCGTAGGAAGTCTTGAAAGTTTGATAATACGGAGGAAGAGCGGATTGCTGGAGGGTGAAGTTCAGCGTTTTACGAGAATGATTGTTAGGGGTCTCCGTGATGTCCACAAGGAAGGCTTCGTCCACTGTGACCTGAAGGTCGATAATATACTCGTGTTTCATTCTGAAAATGGCGGGCATAAAGTTAAGATCGCTGATTTTGGACACGCTAAGAGGTCTGGAAGGGAGGAGTTCAATGGGGCGCTGGGCTCCCAGCATACTTCAGATGACACCCCGCCGGAATGTAGTGGAAACGGAGAAAGCGAGGCACCTAAGGATATATGGTCTCTTGGGTGCATGGTGGTCGAGATGTTTACTGGGAAACCAGCTTGGATGAATTGCAAGGATGTAAATGAGTAG 648 0.466 MEHMITKGILVGVGSSGKVHMAFSNGRLLALKSWCSSCYSSLQKEEEILHRLGHCPDIVDYFGGYSTQEGNGVLVYNLVLEYAPVGSLESLIIRRKSGLLEGEVQRFTRMIVRGLRDVHKEGFVHCDLKVDNILVFHSENGGHKVKIADFGHAKRSGREEFNGALGSQHTSDDTPPECSGNGESEAPKDIWSLGCMVVEMFTGKPAWMNCKDVNE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1310 215 Gene3D Transferase(Phosphotransferase) domain 1 2 215 - -
Vvi12g1310 215 MobiDBLite consensus disorder prediction 163 178 - -
Vvi12g1310 215 SMART serkin_6 5 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1310 215 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 209 - -
Vvi12g1310 215 SUPERFAMILY Protein kinase-like (PK-like) 11 211 IPR011009 -
Vvi12g1310 215 MobiDBLite consensus disorder prediction 162 184 - -
Vvi12g1310 215 Pfam Protein kinase domain 10 209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1310 215 ProSiteProfiles Protein kinase domain profile. 5 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1310 215 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vvi12g1310 215 ProSitePatterns Protein kinases ATP-binding region signature. 11 32 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1310 Vvi-Chr12 19136912 19137559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1310 11 207 MAP Kinase Kinase Kinase AT4G36950 44.928 8.24e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1310 Pkinase 1.9e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1310 - - vvi:104881079 447.973