Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1306 ATGACCCTTGAATATTCTTCATCCTACTCCTTACTCCCCCGACTCATCATCACTCCTTGCTTCTTCATATTTCTCCTTTTCCTTTTGTACTCAATATCATCATTCCATGTCACTTTTACATTTGCCTCTACACCTATCACTTCTTTTTCAAAAGTTGAACAAGATCAAGAAGCACTCGCTCTTCTAACATGGAAGGCCAGTCTTGATAATCAAACCCAATCTTTCCTCTTTTCTTGGTCTGGACGCAATTCTTGCCATCATTGGTTCGGAGTGACTTGTCACAGGTCAGGAAGTGTCTCCGATTTAGACCTTCAAAGTTGCGGTTTGAGAGGTACACTCCATAAACTCAATTTTTCATCACTTTCCAACCTCCTTACTCTTAATCTTTATAACAACTCCCTCTATGGAACCATTCCAATCAACATTGGCAATCTTTCCAAACTGATCATAGTTTTGGACTTTCGTTTCAATCATTTCATTGGTGTGATATCTGACCAATTTGGATTTCTAACATCTCTTAGCTTTCTAGCATTGTCTTCTAATAATTTCAAAGGCCCAATTCCTCCTTCCATAGGGAACTTGAGGAACTTAACCACATTGTACCTTAATTCAAACAACCTATCTGGTTCTATTCCTCAAGAAATTGGATTGTTGAGATCTCTTAATGTTATTGATTTGTCAACTAATAATCTCATTGGCTCAATCCCTCCTTCCATAGGTAATTTGAGGAACTTAACCACTTTGCTCCTTCCGAGAAACAAACTATCTGGTTTTATTCCTCAAGAAATTGGATTATTGAGATCTCTTACTGGTATTGATTTGTCAACTAACAATCTCATTGGTCCAATCCCTTCTTCCATAGGTAACTTGAGGAACTTAACCACTTTGTACCTTAATTCAAACAACCTATCTGATTCTATTCCTCAAGAAATTACATTGTTGAGATCTCTTAATTATCTAGTCTTGTCATATAACAATCTCAATGGTTCACTACCAACTTCCATAGAAAATTGGAAGAACTTAATTATTTTATACATTTATGGTAACCAACTTTCTGGCTCCATTCCTGAAGAAATTGGATTATTGACATCACTTGAGAATCTTGACTTGGCAAACAACAATCTTAGCGGTTCAATACCAGCTTCCTTAGGAAACTTGTCCAAGTTAAGCCTTTTATATCTTTATGGTAACAAACTTTCTGGATTCATCCCTCAAGAATTTGAGTTACTAAGATCTCTTATAGTTCTTGAGTTGGGAAGTAATAATCTCACTGGTCCAATCCCTTCTTTTGTAGGAAACTTGAGGAACTTAACCACTTTGTATCTTTCTCAAAATGACCTTTCTGGTTATATCCCTCGAGAAATCGGATTGTTGAGATTGCTTAATATTCTTGACTTATCATTTAACAATCTCAGTGGTTCAATACCAGCTTCTATAGGAAACTTGTCCAGCTTAACCACTTTGGCTCTTCATTCCAACAAACTCAGTGGTGCCATTCCCCGAGAAATGAATAATGTCACTCATTTGAAATCTTTGCAGATAGGTGAGAATAACTTCATTGGCCACCTACCACAAGAGATATGCCTTGGTAATGCTCTTGAAAAAGTTTCAGCCGCAAGGAACCATTTCACTGGTCCTATTCCAAAGAGCTTGAAAAATTGCACTAGCTTATTCAGAGTTAGGCTTGAAAAAAACCAACTTACTGGAGACATAGCCGAAAGTTTTGGTGTATACCCTAATCTAAATTATATTGATCTGAGCAATAACAATTTTTATGGTGAGCTTTCTGAGAAATGGGGGGAGTGCCACATGCTCACAAACCTGAACATCTCCAATAACAAAATTTCTGGTGCTATACCACCTCAACTTGGGAAAGCAATTCAACTGCAACAACTTGATCTCTCCTCAAATCATCTAATTGGGAAGATCCCAAAAGAATTGGGTATGCTTCCTTTACTGTTCAAGCTGTTGCTAGGCAACAACAAACTTTCAGGAAGTATTCCTCTGGAATTGGGAAACTTATCCGATCTTGAAATCCTTGACTTGGCATCAAACAACTTAAGCGGTCCAATTCCCAAGCAACTGGGAAACTTCTGGAAATTATGGTCCTTGAACATGAGCGAGAATAGATTTGTGGATAGCATTCCTGACGAAATTGGAAAGATGCATCATCTTCAAAGTCTCGATCTTAGTCAAAATATGCTGACAGGAGAGATGCCACCGCGGCTTGGAGAATTACAGAACCTGGAAACGTTGAATCTCTCCCACAACGGGCTATCTGGCACCATTCCACACACGTTTGATGATTTGAGAAGTTTGACAGTTGCTGATATATCCTACAATCAATTGGAAGGTCCTCTCCCCAACATCAATGCCTTTGCTCCATTTGAGGCATTCAAAAATAATAAAGGTCTGTGTGGTAATAATGTCACTCATCTCAAGCCATGTAGTGCTAGTCGAAAGAAGGCCAACAAGTTTTCTATTTTGATCATAATACTCCTCATTGTGAGCAGTCTATTGTTCTTATTTGCTTTTGTTATTGGCATTTTTTTTCTTTTCCAAAAATTGAGGAAGAGAAAAACCAAGTCTCCAAAAGCAGATGTTGAAGATCTATTTGCAATATGGGGCCATGATGGGGAATTGCTGTATGAACACATCATACAGGGGACCGACAATTTCAGTTCGAAGCAGTGTATTGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGTCGGGTTGTTGCTGTGAAAAAGCTTCACTCATCACAAGATGGAGATATGGCTGATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAGATAAGGCATCGCAATATCGTCAAGCTTTATGGCTTCAGTTTATTTGCAGAGAACTCATTTTTGGTTTATGAGTTTATGGAAAAGGGAAGCTTGCGAAGCATTCTAAGAAACGACGAAGAAGCAGAAAAATTAGATTGGATTGTGAGGCTAAACGTTGTTAAAGGCGTGGCTAAAGCTTTATCTTATATGCACCATGATTGCTCACCTCCTATAATTCATCGAGACATATCAAGTAACAATGTTTTGTTAGATTCAGAATATGAAGCTCATGTATCTGACTTTGGCACAGCTAGGCTTTTAAAGTCAGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCATACTCAATGAAGGTGGATTATAAAACCGATGTTTATAGTTACGGTGTTGTAACATTGGAAGTAATTATGGGGAGGCATCCTGGAGAACTCATCTCATCCCTGTTATCATCAGCGTCCTCCTCATCTACATCACCATCAACTGCCGACCATTTCCTGTTGAATGATGTGATAGACCAGCGCCCCTCACCTCCTGTGAATCAAGTGGCAAAGGAAGTAGAGGTTGCAGTGAAGTTGGCATTTGCATGCTTGCGTGTTAATCCCCAATCTCGGCCAACTATGCAACAAGTTGCTCGAGCACTCTCAACACAGTGGCCACCATTGTCGAAACCGTTTTCCATGATTACATTGCTTGAGCTGCAGGATCATGGTCATGGGGGTGAAACTAGCTGA 3594 0.3915 MTLEYSSSYSLLPRLIITPCFFIFLLFLLYSISSFHVTFTFASTPITSFSKVEQDQEALALLTWKASLDNQTQSFLFSWSGRNSCHHWFGVTCHRSGSVSDLDLQSCGLRGTLHKLNFSSLSNLLTLNLYNNSLYGTIPINIGNLSKLIIVLDFRFNHFIGVISDQFGFLTSLSFLALSSNNFKGPIPPSIGNLRNLTTLYLNSNNLSGSIPQEIGLLRSLNVIDLSTNNLIGSIPPSIGNLRNLTTLLLPRNKLSGFIPQEIGLLRSLTGIDLSTNNLIGPIPSSIGNLRNLTTLYLNSNNLSDSIPQEITLLRSLNYLVLSYNNLNGSLPTSIENWKNLIILYIYGNQLSGSIPEEIGLLTSLENLDLANNNLSGSIPASLGNLSKLSLLYLYGNKLSGFIPQEFELLRSLIVLELGSNNLTGPIPSFVGNLRNLTTLYLSQNDLSGYIPREIGLLRLLNILDLSFNNLSGSIPASIGNLSSLTTLALHSNKLSGAIPREMNNVTHLKSLQIGENNFIGHLPQEICLGNALEKVSAARNHFTGPIPKSLKNCTSLFRVRLEKNQLTGDIAESFGVYPNLNYIDLSNNNFYGELSEKWGECHMLTNLNISNNKISGAIPPQLGKAIQLQQLDLSSNHLIGKIPKELGMLPLLFKLLLGNNKLSGSIPLELGNLSDLEILDLASNNLSGPIPKQLGNFWKLWSLNMSENRFVDSIPDEIGKMHHLQSLDLSQNMLTGEMPPRLGELQNLETLNLSHNGLSGTIPHTFDDLRSLTVADISYNQLEGPLPNINAFAPFEAFKNNKGLCGNNVTHLKPCSASRKKANKFSILIIILLIVSSLLFLFAFVIGIFFLFQKLRKRKTKSPKADVEDLFAIWGHDGELLYEHIIQGTDNFSSKQCIGTGGYGTVYKAELPTGRVVAVKKLHSSQDGDMADLKAFKSEIHALTQIRHRNIVKLYGFSLFAENSFLVYEFMEKGSLRSILRNDEEAEKLDWIVRLNVVKGVAKALSYMHHDCSPPIIHRDISSNNVLLDSEYEAHVSDFGTARLLKSDSSNWTSFAGTFGYTAPELAYSMKVDYKTDVYSYGVVTLEVIMGRHPGELISSLLSSASSSSTSPSTADHFLLNDVIDQRPSPPVNQVAKEVEVAVKLAFACLRVNPQSRPTMQQVARALSTQWPPLSKPFSMITLLELQDHGHGGETS* 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1306 1197 Gene3D Ribonuclease Inhibitor 504 818 IPR032675 -
Vvi12g1306 1197 ProSiteProfiles Leucine-rich repeat profile. 292 314 IPR001611 GO:0005515
Vvi12g1306 1197 SMART LRR_sd22_2 458 484 - -
Vvi12g1306 1197 SMART LRR_sd22_2 722 751 - -
Vvi12g1306 1197 SMART LRR_sd22_2 362 388 - -
Vvi12g1306 1197 SMART LRR_sd22_2 194 209 - -
Vvi12g1306 1197 SMART LRR_sd22_2 674 700 - -
Vvi12g1306 1197 SMART LRR_sd22_2 290 309 - -
Vvi12g1306 1197 SMART LRR_sd22_2 434 449 - -
Vvi12g1306 1197 CDD STKc_IRAK 899 1168 - -
Vvi12g1306 1197 SUPERFAMILY L domain-like 56 311 - -
Vvi12g1306 1197 PANTHER LEUCINE RICH REPEAT KINASE 2 432 1179 - -
Vvi12g1306 1197 SUPERFAMILY Protein kinase-like (PK-like) 877 1168 IPR011009 -
Vvi12g1306 1197 Gene3D Transferase(Phosphotransferase) domain 1 972 1173 - -
Vvi12g1306 1197 Pfam Leucine rich repeat N-terminal domain 55 93 IPR013210 -
Vvi12g1306 1197 FunFam Uncharacterized protein 220 376 - -
Vvi12g1306 1197 FunFam Uncharacterized protein 476 818 - -
Vvi12g1306 1197 FunFam MDIS1-interacting receptor like kinase 2 972 1174 - -
Vvi12g1306 1197 Pfam Leucine rich repeat 724 783 IPR001611 GO:0005515
Vvi12g1306 1197 Pfam Leucine rich repeat 364 423 IPR001611 GO:0005515
Vvi12g1306 1197 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 381 475 - -
Vvi12g1306 1197 ProSiteProfiles Protein kinase domain profile. 893 1180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1306 1197 FunFam Probable leucine-rich repeat receptor-like protein kinase At1g35710 54 212 - -
Vvi12g1306 1197 SUPERFAMILY RNI-like 307 645 - -
Vvi12g1306 1197 PRINTS Leucine-rich repeat signature 725 738 - -
Vvi12g1306 1197 PRINTS Leucine-rich repeat signature 746 759 - -
Vvi12g1306 1197 Pfam Protein kinase domain 894 1165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1306 1197 Gene3D Ribonuclease Inhibitor 405 503 IPR032675 -
Vvi12g1306 1197 Gene3D Ribonuclease Inhibitor 212 309 IPR032675 -
Vvi12g1306 1197 Gene3D Phosphorylase Kinase; domain 1 855 971 - -
Vvi12g1306 1197 FunFam Leucine-rich repeat receptor protein kinase MSP1 856 971 - -
Vvi12g1306 1197 ProSitePatterns Protein kinases ATP-binding region signature. 899 922 IPR017441 GO:0005524
Vvi12g1306 1197 ProSiteProfiles Leucine-rich repeat profile. 196 218 IPR001611 GO:0005515
Vvi12g1306 1197 Gene3D Ribonuclease Inhibitor 53 211 IPR032675 -
Vvi12g1306 1197 Gene3D Ribonuclease Inhibitor 310 404 IPR032675 -
Vvi12g1306 1197 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1017 1029 IPR008266 GO:0004672|GO:0006468
Vvi12g1306 1197 ProSiteProfiles Leucine-rich repeat profile. 364 387 IPR001611 GO:0005515
Vvi12g1306 1197 SMART LRR_typ_2 506 530 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 314 338 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 121 145 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 434 458 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 362 385 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 746 769 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 482 505 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 290 313 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 194 218 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 242 266 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 722 744 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 386 409 IPR003591 -
Vvi12g1306 1197 SMART LRR_typ_2 674 698 IPR003591 -
Vvi12g1306 1197 SUPERFAMILY L domain-like 599 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1306 Vvi-Chr12 19038288 19041987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1306 48 692 Receptor kinase-like Gene Family AT4G08850 37.288 4.84e-107 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi12g1306 Pkinase 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1306 - - vvi:100246346 2157.1