Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1304 ATGGAACATATGATAACCAAGGGAATTCTTGTTGGCGTGGGAAGTTCCGGCAAGGTGCACATGGCATTCTCCAATGGCCGCCTACTAGCTCTGAAATCTTCGTGTTCTTCTTGTTATTCTTCACTTCAAAAGGAGGAAGAGATTCTTCATAGCCTTGGACACTGCCCAGATATTGTTGACTGCTTTGGAGGTTACTCAACCCAGGAAGGCAATGGCGTTTTGGTCTATAATTTAGTTCTTGAGTATGCACCCGTAGGAAGTCTTGAGAGTTTGATGATACGGAGGAAGAGCGGATTGCTGGAGAGTGAAGTTCAGCGTTTTACGAGAATGATTGTTAGGGGTCTCCGTGATGTCCACAAGGAAGGCTTCGTCCACTGTGACCTGAAGGTCGATAATATACTCGTGTTTCATTCTGAAAATGGCGGGCATAAAGTTAAGATCGCTGATTTTGGACATGCTAAGAGGTCTGGAAGGGAGGAGTTCAGTGGGGCGCTGGGCTCCCAGCATACTTCAGATGACACCCCGCCGGAATGTAGTGGAAACGGAGAAAGCGAGGCACCTAAGGATATATGGTCTCTTGGGTGCATGGTGGTCGAGATGTTTACTGGGAAACCAGCTTGGATGAATTGCAAGGATGTAAATGAGTTGGCTGTCCGTATGGTTTCTTGGAGGCAAGTGCCTAAAGTACTCGGAAATATATCAGAAGACGCCAAGGATTTTCTGAGAAGGTGTCTGGAGAAGGATCCAACAGAGAGATGGACGGCTGAAAGGCTGTTGAGTCATACCTTTATTACCCAAGTTCCGGCTTCAGAAGTTCCGGCAAGTCAATAA 831 0.4693 MEHMITKGILVGVGSSGKVHMAFSNGRLLALKSSCSSCYSSLQKEEEILHSLGHCPDIVDCFGGYSTQEGNGVLVYNLVLEYAPVGSLESLMIRRKSGLLESEVQRFTRMIVRGLRDVHKEGFVHCDLKVDNILVFHSENGGHKVKIADFGHAKRSGREEFSGALGSQHTSDDTPPECSGNGESEAPKDIWSLGCMVVEMFTGKPAWMNCKDVNELAVRMVSWRQVPKVLGNISEDAKDFLRRCLEKDPTERWTAERLLSHTFITQVPASEVPASQ* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1304 276 MobiDBLite consensus disorder prediction 163 178 - -
Vvi12g1304 276 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 266 - -
Vvi12g1304 276 SUPERFAMILY Protein kinase-like (PK-like) 11 271 IPR011009 -
Vvi12g1304 276 Gene3D Transferase(Phosphotransferase) domain 1 5 275 - -
Vvi12g1304 276 ProSiteProfiles Protein kinase domain profile. 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1304 276 MobiDBLite consensus disorder prediction 161 184 - -
Vvi12g1304 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vvi12g1304 276 Pfam Protein kinase domain 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1304 276 ProSitePatterns Protein kinases ATP-binding region signature. 11 32 IPR017441 GO:0005524
Vvi12g1304 276 SMART serkin_6 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1304 Vvi-Chr12 19030864 19031694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1304 11 265 MAP Kinase Kinase Kinase AT4G36950 44.030 5.32e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1304 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1304 - - vri:117910793 536.954