Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1303 ATGGAGGAAACGATTCTTCGACGCCTTCGATGCTCCCCAGATGTTGTTTACTGCTTTGGAGGTTACTCTACCCAGGAAGCTAATGGCGATTCGGCCTACAATCTAGTTCTTGAGTATGCAGCCGGAGGAAGTCTTGGGCGTTTGATGTTTAGCAGGACGAGTGGATCGCCGGAGAGTGAAGTTCAGTGGTATACAAGAATGATTGTTAGGGGTCTCCATGCTGTCCACCGGGAAGGGTTCGTCCACTGTGATCTGAAGCTCAGTAATATGCTTCTCTTCCCTACTGAAGATGGTAGGTGGAGGGTTAAGATCGCTGATTTTGGACTGTCTAAAAGGTTTGGAAGGGAGGAGTTCTGCCGGCCGCTCACGTTTCGGGGCACTGCAAATTACATGTCGCCGGAATCTATTGTGTACAGTGAAAACGAGGCGCCTCTGGATATATGGTGTCTTGGGTGCATGGTGATCGAGATGTTTACTGGTAAACCAACTTGGGAGAATTGCAAGGACGAGAATGACTTGATTCTTCATATAGTGTTTTGGAGACAAGTTCCTCTGATACCTGAAAATATATCAGAAGAGGCTAAGGATTTTTTGAAGAAGTGTCTGGCAAGGGATCCGTCCCAAAGATGGACTGCTGAAATGCTGTTGACTCATCCGTTTATTGACTCAGTTCTGCTGCCTTTATAG 687 0.4702 MEETILRRLRCSPDVVYCFGGYSTQEANGDSAYNLVLEYAAGGSLGRLMFSRTSGSPESEVQWYTRMIVRGLHAVHREGFVHCDLKLSNMLLFPTEDGRWRVKIADFGLSKRFGREEFCRPLTFRGTANYMSPESIVYSENEAPLDIWCLGCMVIEMFTGKPTWENCKDENDLILHIVFWRQVPLIPENISEEAKDFLKKCLARDPSQRWTAEMLLTHPFIDSVLLPL* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1303 228 Pfam Protein kinase domain 2 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1303 228 ProSitePatterns Serine/Threonine protein kinases active-site signature. 80 92 IPR008271 GO:0004672|GO:0006468
Vvi12g1303 228 Gene3D Transferase(Phosphotransferase) domain 1 1 225 - -
Vvi12g1303 228 ProSiteProfiles Protein kinase domain profile. 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1303 228 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 221 - -
Vvi12g1303 228 SMART serkin_6 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1303 228 SUPERFAMILY Protein kinase-like (PK-like) 2 225 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1303 Vvi-Chr12 19027234 19027920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1303 2 221 MAP Kinase Kinase Kinase AT5G67080 46.460 3.91e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1303 Pkinase 2.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1303 - - vvi:100853454 478.789