Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1302 ATGGGGAAGGGGCCGTTCTCGTTTCGCCGGACCTCCAGTCGCCGCCGCCTCAAGAAGGCGCCAGAGGGCCCCTCTCCCCCGGCGCCTCCGCCTCCGATGATGATCGAGGCATCCTTGTCGCCCAATAATCAGACCGCGAACACCTCGATCGCCGCCGCGTCTGGCGGTGGTGGTGGAGCAGGGGGAAAGGCGAAAAAGAAGACCGGTGGAGCAAGGTTGTGGATGCGGTTCGACCGGTGCGGGCAGTCGGAGTTGCTGGAATGTGATAAGAGCACGATCATCAGGCGGGCGGCGATTCCGGCAAGGGATTTGAGAATTCTCGGCCCTGTCTTCTCTCATTCCTCTAATATTCTTGCTAGGGAAAAGGCCATGGTTGTCAATCTAGAGTTCATAAAGGCTATAGTTACAGCTGAAGAAGTGTTGTTGCTAGATCCTCTTCGACAGGAGGTTCTTCCATTTGTGGATCAGCTAAGACAACAACTTCCTCATAAAAGCCCATTTAGAATGCATGGGGCAAGCCCTCTGGATACACAAGAGAATGAAATGCAGTTTTCGACAGGTGGTCGTTGGTTACCTGTTCCTGACTCTGAAGGGTTGCAGAATGAGCTTCCCTTTGAGTTTCAGGTTCTGGAGATTGCATTAGAGGTTGTCTGTACATATCTTGACACCAATGTGGCAGAACTGGAGAGAGATGCTTACCCTGTCCTGGATGAGCTGGCCAGGAACGTTAGCACCAAGAATCTTGAACATGTCCGGAGTTTAAAAAGCAATCTTACACGTCTTCTCGCCCGAGTGCAAAAGGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATTTATACTTAACAAGGAAGTGGATCCAGAATCAGCAAAATGAGGCTTTGTTGGGAGCTGCAGTATCCAATAGTCTCATCACTCCGGCACCCTATCTTCCAAGACTCAGTTCTCACAGGAGTGTGAGTTTGGCAACTAGCAACTTTGTGGATGATGATGATGTGGAGGATCTGGAGATGTTGCTTGAGGCATACTTCATGCAGCTGGACGGGACTCGTAACAAGATATTGTCTGTTCGGGAGTATATTGATGACACAGAAGACTATGTTAACATCCAACTGGACAACCAGCGAAACGAACTCATTCAACTCCAATTGACCTTGACCATTGCATCATTTGCTATAGCCGTTGAAACTCTGATTGCTGGATTATTTGGTATGAACATCCCTTGTCCATTATACGAAATGCATGGGGTCTTCAACCCCTTCGTTGGATGTGTCACAGCTGGTTGTATATTGCTATTCCTGCTTGTTCTCGGGTACGCCAGATGGAAGAAGCTGCTGGGTTCATGA 1362 0.4927 MGKGPFSFRRTSSRRRLKKAPEGPSPPAPPPPMMIEASLSPNNQTANTSIAAASGGGGGAGGKAKKKTGGARLWMRFDRCGQSELLECDKSTIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVLPFVDQLRQQLPHKSPFRMHGASPLDTQENEMQFSTGGRWLPVPDSEGLQNELPFEFQVLEIALEVVCTYLDTNVAELERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDELEHLLDDNEDMADLYLTRKWIQNQQNEALLGAAVSNSLITPAPYLPRLSSHRSVSLATSNFVDDDDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIAVETLIAGLFGMNIPCPLYEMHGVFNPFVGCVTAGCILLFLLVLGYARWKKLLGS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1302 453 CDD Mrs2_Mfm1p-like 74 450 IPR039204 -
Vvi12g1302 453 Gene3D Magnesium transport protein CorA, transmembrane region 146 384 - -
Vvi12g1302 453 Coils Coil 251 285 - -
Vvi12g1302 453 Gene3D - 62 145 - -
Vvi12g1302 453 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 389 440 IPR045863 -
Vvi12g1302 453 Gene3D Magnesium transport protein CorA, transmembrane region 391 451 - -
Vvi12g1302 453 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 46 451 IPR039204 -
Vvi12g1302 453 FunFam Magnesium transporter MRS2-1 62 145 - -
Vvi12g1302 453 MobiDBLite consensus disorder prediction 22 36 - -
Vvi12g1302 453 MobiDBLite consensus disorder prediction 46 65 - -
Vvi12g1302 453 Pfam CorA-like Mg2+ transporter protein 341 444 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi12g1302 453 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1302 Vvi-Chr12 19013491 19023661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1302 1 453 MRS2 Gene Family AT3G58970 69.365 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1302 K16075 - vvi:100246349 828.935