Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1301 ATGGAGACGAAGCCTTCAGTGAAAGGCAATTTGCTAGGCCGAGGACGCCATGGCAGGGTTTACTCAGCCTTCTCCTTCAACCACACTCCTCACCATCTCGCTGTCAAATCCGCATTTTCTTCGCATTCATCTTTACTTGCCAAGGAGAAACGCATCCTTTCCGAACTCCAACACTGCCCGGAGATTGTTCACTGTTATGGAGACGATTCCACCATGGAAGAGGGCGTGGAGACTTACAACTTATTCCTCGAGTATGCCCCAGGAGGAAGTCTATCAGACTTGATTCGCAACAGTGGAGGCACGTTGCCGGAATCCAACGTCCAACTCTACACCAGAATGATACTCAAGGGTCTCTGTCACATCCATGAAAAAGGGTACGTACACTGCGATATCAAGCCCAGTAACATGCTTATTTTTCCGTTGGAAGATGGTGGGAACAAGGTTAAGATTGCGGATTTCGGATTGGCGAAAAGGATCGGAGAAGAGAGAGCTCTACAGCTGCCTCAGTTCAGCGGGACGCCGGCTTACATGTCGCCGGAGTCGGTTCTTTACGGTGAAGACGAGCCACCCTTGGATGTATGGTCTCTGGGTATTACTGTGGTGGAGATGCTTACTGGGAAACTGGTTTGGAGGAGGTTAGGAAAGGAGGACCTGCTGTTCAGTATAGTTTTCGGAGAGCCTGAAATCCCAGAAAGCGTATCGGAAGAGGGGAAGGATTTTCTGAGGATGTGTTTCAGAAGGGAGGCTAAAGAGAGATGGACAGCGAGAATGCTGCTGAACCACCCTTTCACTACTGAAGAACCCTCGTCCATGGCTATGGAAACAAGCCATTTTGATTGGAGTCGGTTGAAGTTGCGGGATCCACTGGCGTCAACTGGCTCGTCTTCTTCTCCGAGGTCGCGTTCTAATTCTTTCTTCAATCGGTTTTGCTCTTCAATGCAGTCTCTTTTTAAGATTTCCTTGGTTCTTTTTCATACATATTTGGGTTGA 990 0.4869 METKPSVKGNLLGRGRHGRVYSAFSFNHTPHHLAVKSAFSSHSSLLAKEKRILSELQHCPEIVHCYGDDSTMEEGVETYNLFLEYAPGGSLSDLIRNSGGTLPESNVQLYTRMILKGLCHIHEKGYVHCDIKPSNMLIFPLEDGGNKVKIADFGLAKRIGEERALQLPQFSGTPAYMSPESVLYGEDEPPLDVWSLGITVVEMLTGKLVWRRLGKEDLLFSIVFGEPEIPESVSEEGKDFLRMCFRREAKERWTARMLLNHPFTTEEPSSMAMETSHFDWSRLKLRDPLASTGSSSSPRSRSNSFFNRFCSSMQSLFKISLVLFHTYLG* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1301 329 CDD STKc_MAPKKK 7 263 - -
Vvi12g1301 329 ProSitePatterns Protein kinases ATP-binding region signature. 12 36 IPR017441 GO:0005524
Vvi12g1301 329 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 7 282 - -
Vvi12g1301 329 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1301 329 SMART serkin_6 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1301 329 FunFam Protein kinase superfamily protein 3 286 - -
Vvi12g1301 329 Gene3D Transferase(Phosphotransferase) domain 1 5 310 - -
Vvi12g1301 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Vvi12g1301 329 ProSiteProfiles Protein kinase domain profile. 6 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1301 329 SUPERFAMILY Protein kinase-like (PK-like) 9 303 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1301 Vvi-Chr12 19006954 19007943 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1301 30 263 MAP Kinase Kinase Kinase AT4G36950 51.230 1.19e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi12g1301 Pkinase 3.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1301 - - vvi:100258353 654.825