Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1297 ATGGCAGGGGCTTTAGCTGGAGGTGCGTTTCTCTCAGCTTCCCTCCAAGTTCTATTTGACAGGTTGGCTTCTCGCGAGGTTGTGAGCTTCATCCAGGGGCAGAAGCTCAGCGATGCGCTCCTGAAGAAGTTGGAAAGGAAGTTGCTGGTCGTCCATGCAGTGCTCAACGATGCTGAGGTCAAACAGTTTACAAATCCATATGTGAAGAAGTGGCTGGTCTTGCTTAGAGAGGCCGTGTATGATGCGGAGGACATATTGGATGAGATCACCACAGAGGCTTTGCGACACAAGGTGGAAGCTGCGGAGTCCCAAACCAGCACAAGTCAGGTGGGTAACATCATGGACATGTCAACCTGGGTTCTCGCTCCATTTGATGGTCAGGGCATAGAGTCTAGGGTGGAGGAGATCATTGATAGACTAGAAGATATGGCACGAGACAGAGACGTCCTTGGGTTGAAAGAAGGTGATGGCGAGAAACTGTCACAAAGGTGGCCTTCCACTTCTTTGGTAGATGAATCTCTTGTCTATGGCAGGGATCAAATTAAGGAGGAGATGGTTCAACTGTTGCTGTCCGATAATGCAAGGAGTACTGATGCGATGGGTGTGATCTCCATAGTCGGCATGGGTGGCACAGGCAAAACCACACTTGCCCAGCTGCTCTACAATGACCAAAGGGTGACGGAACACTTCGATCTCAAGGCATGGGTTTGTGTTTCCGAAGAATTTGATCCTATCAGAGTTACGAAAACAATTCTCGAGGCAATCAATTCATCCACTTCCAATACCACTGATCTAAATCTACTTCAGGTTCAACTGAAGGAGAGAATTAGTATGAAGAAATTTTTACTTGTCCTGGATGATGTTTGGAACGAAGACTCTTGTGACTGGGATGCGCTACGAACTCCACTCATTGTCGGGGCAAAGGGAAGCAAGATTATTGTAACTACGCGAAGCACCAATGTTGCATTTGCCATGCATGCAGTCCGTACTCATTGTTTAGGTAGGTTATCCTCTGAAGATGGTTGGTCCCTGTTCAAAAAACTTGCATTTGAAAGTGGAGACTCAAGTGGGCATCCCCAACTAGAAGCAATCGGAGAAAAGATTGTCCACAAGTGCCAAGGTCTACCGCTGGCTATAAAAGCAATGGGGAGTCTCTTACACTCCAAGGTTGAAGCAAGAGAATGGGATGATGTATTAAACAGTGAATTATGGGATTTGCCCACAAATGCGGTTCTTCCTGCTCCGAGGTTGAGTTATTATTACCTGCCTTCACATCTAAAACGCTGTTTTTCTTATTGTTCAATCTTTCCCAAAGACTACAAATTCGAAAAGGAGAAGCTAGTTTTGTTATGGATGGCAGAAGGTTTGTTGGAACAATCAAAAAGCAAGAAAAGAATGGAACAAGTAGGTAATTTGTACTTTCAAGAACTTCTATCAAAGTCCTTTTTCCAAAATTCAATGAGAAATAAGTCATGTTTTGTAATGCACGACCTCGTTAATGACTTGGCACAATTGGTATCTCTAGAATTTTCTGTTTCTTTGGAGGATGGTAAGATACACAGAGTCTCGGAGAAAACTCATCATTTGTCATATTTGATCAGTGGATATGATGTATATGAGAGATTTGATCCACTTTCTCAAATGAAGTGCCTCCGAACATTTTTACCAAGAAGAAAATATTATTATTCATACTTGAGTAATGGAGTTTTACACCATCTATTACCGGAAATGAAATGTTTACGAGTGTTGTGTTTGAATAATTATCGTACTACTGATTTGCCTCATTCAATTGAGAAGTTGAAACACTTGCGCTACTTGGATCTCTCAATGACAACGATTCAAAAGTTGCCTGAATCAGTTTGTAACTTATACAATTTACAAACAATGATGTTATCAAGATGTTATTGGCTTGTTGAATTACCCTCAAGGATGGAAAAATTGATTAATTTGTGCTACCTTGATATTCGTTATACTTCTTCGGTGAAAGAGATGCCAAGTGATATATGTAAGCTAAAGAATTTACACTCACTTTCTACATTTATTGTGGGCCAAAATGGTGGGTTAAGATTGGGAACATTGAGGGAGCTTTCGGGAAGTCTTGTCATTTCAAAGCTGCAGAATGTAGTATGTGATAGGGATGCATTAGAAGCTAATATGAAGGATAAAAAGTACCTTGATGAGTTGAAGTTTGAGTGGGATAATGAGAGCACTGATGTTGGTGGTGTTATGCAAAATAGAAGGGATATACTCAGCAGCTTACAGCCACATACAAACCTCAAGAGACTCCATATTAATTCTTTTAGTGGTTTAAGCTTTCCAGCTTGGGTAGGAGATCCTTCATTCTTCAATCTTGTTGACCTGGGGCTTCAGAATTGTAACAATTGCTCGTCATTGCCACCACTCGGGCAGCTACCCTCTCTTAAACATCTTTCTATCTTACAAATGAAAGGAGTTAAAATGGTGGGTAGTGAATTTTATGGGAATGCTTCTTCCTCCAACACAATTAAGCCCTCCTTCCCGTCCCTACAAACTCTAAGGTTCGAGAGGATGTACAATTGGGAGAAATGGTTATGTTGTGGATGCAGACGTGGCGAATTCCCTCGTCTTCAGCAGCTCTGTATAAATGAATGTCCCAAACTCACTGGGAAATTACCAAAACAGCTTCGTTCATTGAAGAAACTTGAAATCAGTAGTTCCGAGTTGGTTGTGGGCTCCCTCCGAGCTCCTCAAATCCGTGAAAGGAAAATGGGGTATCATGGTAAATTTCGGTTGAAAAAGCCAGCTGGTGGGTTCACTGATCTCCAAACTTCAGAAATTCAAATTTCAGACATCTCTCAATTGGAGGAACTGCCACCACGAATACAGACGCTAAGAATCAGAGAATGTGATTCGATAGAGTGGGTATTGGAGGAGGGAATGCTACAAGGAAGCACATGTCTTCTCCAACATTTGCACATCACAAGTTGTCGTTTCTCCAGACCCTTGCACAGCGTTGGTTTACCCACTACATTGAAGTCACTAATTATCTGGGAGTGTACCAAACTGGAGTTTCTCCTGCCTGCGCTATTGACATCCCACCTTCCATTCCTTGAATATTTATACATTTTTTATGTTACCAGCCGTAATTCTTTCTCATTATCTTTCTCATTAAGCATCTTCCCACGGTTGACTCATTTGCACATCCTTGAATTTGAAGGGCTTGCATTCCTCTCCATCTCCATTTCAGAGGGGGATCCCACTTCTCTTAATCGTTTGGATATCCGAAAGTGCCCTGATCTTGTATATATTGAATTGCCCGCTCTTGAGTCAGCACACAATTATATCTTCAGATGCAGGAAGCTGAAGTTGCTGGCGCACACACACTCATCGTTGCAGGAATTGAGGTTAATAGATTGTCCAGAATTGTGGTTTCAGAAAGATGGTTTGCCCTCCGACCTACGTGAAGTTGAAATTTCATCCTGCAACCAACTCACATCTCAGGTGGACTGGGGTTTGCAAAGACTGGCCTCTCTTACAAAATTCACAATCAGTGGCGGATGCCAAGACATGGAATCATTTCCCAAGGAATCCCTACTGCCCTCCACACTTTCCTCTCTTAACATATCTGGTCTTCCGAATCTCAAGTCTCTGGACAGCAAGGGGCTACAACAACTTACCTCTCTAACAACATTATCCATCTCCGATTGCCCTAAGTTCCAATCCTTCGGAGAAGAGGGGCTTCAACATCTTACCTCTCTTGAAAAATTAAAGATGGACTCCCTCCCTGTGCTCGAATCCTTGAGAGAAGTAGGTCTTCAACACCTCACCTCTCTTAAAAAATTGTCTATCTCCAATTGCCCACATCTCCAATGCTTGACAAAAGAGAGACTGCCAAACTCCCTCTCTCGTCTGAAAATCAAGAGTTGTCCTTTGCTGGAGCATGGGTGCCGATTTGAGAAAGGCCAAGATTGGGAATATATAGCTCACATTCCACGCATAGTGATAGGTGGTCCCTCCACGTATAAGAGACTTGTGTTCTTGATATATGCCTGTGATCTTTCCAATGAAACAATATTTGATGAGTCTCCCCCTAGAAAGGCAGCAGCAAACACACACATCAGAGACTATTCCATTGGAAATTTGTAA 4125 0.4262 MAGALAGGAFLSASLQVLFDRLASREVVSFIQGQKLSDALLKKLERKLLVVHAVLNDAEVKQFTNPYVKKWLVLLREAVYDAEDILDEITTEALRHKVEAAESQTSTSQVGNIMDMSTWVLAPFDGQGIESRVEEIIDRLEDMARDRDVLGLKEGDGEKLSQRWPSTSLVDESLVYGRDQIKEEMVQLLLSDNARSTDAMGVISIVGMGGTGKTTLAQLLYNDQRVTEHFDLKAWVCVSEEFDPIRVTKTILEAINSSTSNTTDLNLLQVQLKERISMKKFLLVLDDVWNEDSCDWDALRTPLIVGAKGSKIIVTTRSTNVAFAMHAVRTHCLGRLSSEDGWSLFKKLAFESGDSSGHPQLEAIGEKIVHKCQGLPLAIKAMGSLLHSKVEAREWDDVLNSELWDLPTNAVLPAPRLSYYYLPSHLKRCFSYCSIFPKDYKFEKEKLVLLWMAEGLLEQSKSKKRMEQVGNLYFQELLSKSFFQNSMRNKSCFVMHDLVNDLAQLVSLEFSVSLEDGKIHRVSEKTHHLSYLISGYDVYERFDPLSQMKCLRTFLPRRKYYYSYLSNGVLHHLLPEMKCLRVLCLNNYRTTDLPHSIEKLKHLRYLDLSMTTIQKLPESVCNLYNLQTMMLSRCYWLVELPSRMEKLINLCYLDIRYTSSVKEMPSDICKLKNLHSLSTFIVGQNGGLRLGTLRELSGSLVISKLQNVVCDRDALEANMKDKKYLDELKFEWDNESTDVGGVMQNRRDILSSLQPHTNLKRLHINSFSGLSFPAWVGDPSFFNLVDLGLQNCNNCSSLPPLGQLPSLKHLSILQMKGVKMVGSEFYGNASSSNTIKPSFPSLQTLRFERMYNWEKWLCCGCRRGEFPRLQQLCINECPKLTGKLPKQLRSLKKLEISSSELVVGSLRAPQIRERKMGYHGKFRLKKPAGGFTDLQTSEIQISDISQLEELPPRIQTLRIRECDSIEWVLEEGMLQGSTCLLQHLHITSCRFSRPLHSVGLPTTLKSLIIWECTKLEFLLPALLTSHLPFLEYLYIFYVTSRNSFSLSFSLSIFPRLTHLHILEFEGLAFLSISISEGDPTSLNRLDIRKCPDLVYIELPALESAHNYIFRCRKLKLLAHTHSSLQELRLIDCPELWFQKDGLPSDLREVEISSCNQLTSQVDWGLQRLASLTKFTISGGCQDMESFPKESLLPSTLSSLNISGLPNLKSLDSKGLQQLTSLTTLSISDCPKFQSFGEEGLQHLTSLEKLKMDSLPVLESLREVGLQHLTSLKKLSISNCPHLQCLTKERLPNSLSRLKIKSCPLLEHGCRFEKGQDWEYIAHIPRIVIGGPSTYKRLVFLIYACDLSNETIFDESPPRKAAANTHIRDYSIGNL* 1375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1297 1374 PRINTS Disease resistance protein signature 202 217 - -
Vvi12g1297 1374 PRINTS Disease resistance protein signature 886 902 - -
Vvi12g1297 1374 PRINTS Disease resistance protein signature 275 289 - -
Vvi12g1297 1374 PRINTS Disease resistance protein signature 372 386 - -
Vvi12g1297 1374 Gene3D Ribonuclease Inhibitor 926 1106 IPR032675 -
Vvi12g1297 1374 Gene3D Ribonuclease Inhibitor 1142 1311 IPR032675 -
Vvi12g1297 1374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 433 IPR027417 -
Vvi12g1297 1374 Gene3D - 18 121 - -
Vvi12g1297 1374 PANTHER DISEASE RESISTANCE PROTEIN RP 41 857 IPR044974 GO:0006952
Vvi12g1297 1374 SUPERFAMILY RNI-like 1046 1310 - -
Vvi12g1297 1374 Gene3D Ribonuclease Inhibitor 540 911 IPR032675 -
Vvi12g1297 1374 SUPERFAMILY L domain-like 487 901 - -
Vvi12g1297 1374 SUPERFAMILY L domain-like 934 1096 - -
Vvi12g1297 1374 Gene3D - 419 505 IPR036388 -
Vvi12g1297 1374 FunFam Probable disease resistance protein At1g61300 161 329 - -
Vvi12g1297 1374 Pfam NB-ARC domain 198 400 IPR002182 GO:0043531
Vvi12g1297 1374 FunFam Probable disease resistance protein At1g63360 419 505 - -
Vvi12g1297 1374 Coils Coil 1374 1374 - -
Vvi12g1297 1374 Pfam Rx N-terminal domain 10 102 IPR041118 -
Vvi12g1297 1374 Gene3D - 158 330 IPR027417 -
Vvi12g1297 1374 Gene3D - 335 418 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1297 Vvi-Chr12 18978545 18982936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1297 203 666 WRKY Transcription Factor Family AT5G45050 22.134 3.58e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1297 - - vvi:100258269 2265.34