Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1286 ATGTCCAATAATTCATTCAACCATTGGAAACTTCGCCTGAACCAATCTTTTCTAGTTTGGAGGTTGGCTTCTCGCGAGGTTGTGAGCTTCATCCGGGGGCAGAAGCTCAGCGATGCGCTCCTGAAGAAGTTGGAAAGGAAGTTGCTGGTCGTCCATGCAGTGCTCAACGATGCTGAGGTCAAACAATTTACAAATCCATATGTGAAGAAGTGGCTGGTCTTGCTTAAAGAGGCCGTGTATGATGCGGAGGACATATTGGATGAGATCACCACAGAGGCTTTGCGACACAAGGTGGAAGCTGCGGAGTCCCAAACCAGCACAAGTCAGGTGGGTAACATCATGGACATGTCAACCTGGGTTCTCGCTCCATTTTATGGTCAGGGCATAGAGTCTAGGGTGGAGGAGATCATTGATAGACTAGAAGATATGGCACGAGACAGAGACGTCCTCGGGTTGAAAGAAGGCGTTGGTGAGAAATTGGCACAAAGGTGGCCTTCTACTTCTTTGGTAGATGAATCTCTTGTCTATGGCAGGGCTCAAATTAAGGAGGAGATGGTTCAACTGTTGCTGTGCAATAATGCAAGGAGTACTGATGCGATGGGTGTGATCTCCATAGTCGGCATGGGTGGCACAGGCAAAACCACACTTGCCCAGCTTCTCTACAATGACCAAAGGGTGAAGGAACACTTCGATCTCAAGGCATGGGTTTGTGTTTCCGAAGAATTTGATCCTATCAGAGTAACGAAAACAATTCTCGAGGCAATCAATTCATCCACGTCCAATACCACTGATCTAAATCTACTTCAGGTTCAACTGAAGGAGAGAATTAATATGAAGAAATTTCTACTTGTCCTTGATGATGTTTGGAACGAAGACTCTTGTGACTGGGATACGCTACGAACTCCGCTCATAGTCGGGGCAAAGGGAAGCAAGATTATTGTAACTACGAGAAGCACCAAGGTTGCATCTGCCATGCGTGCAGTCCATACTCATTGTTTAGGTGGGTTATCCTCTGAAGATGGCTGGTCCCTGTTCAAAAAACTTGCATTTGAAAATGGAGACTCAAGTGGGCATCCACAACTAGAAGCAATCGGAGAAAAGATTGTCCACAAGTGCCAAGGTCTACCGCTGGCTATAAAAGCAATGGGGAGTCTCTTACACTCCAAGGTTGAAGCAAGAGAATGGGATGATGTATTAAACAGTGAATTATGGGATTTGCCCACAGATGCGGTTCTTCCTGCTCTGAGGTTGAGTTATTATTACCTGCCTTCACATCTAAAACGTTGTTTTTCTTATTGTTCAATCTTTCCCAAAGACTACAAATTCGAAAAGGAGAAGCTAGTTTTGTTATGGATGGCAGAAGGTTTGTTGGAACAATCAAAAAGCAAGAAAAGACCGGAGGAGGTAGGCAATTTGTACTTTGAAGAACTTCTATCAAAGTCATTTTTCCAAAATTCAGTAAGTAATGAGTCATGTTTTGTAATGCACGACCTTGTTAATGACTTGGCACAATTGTTGCCTGAATCGGTTTGTAACTTATACAATTTACAAACAATGATGTTATTGGGATGTGATTATCTCGTTGAATTACCCTCAAGGATGGAAAAATTGATTAATTTGCGCTACCTTGATATTCGTTATACTTCTTCAGTGAAAGAGATGCCAAGTGATATATGTAAGCTAAAGAATTTACAATCACTTTCTACATTTATTGTGGGCCAAAATGGTGGGTTAAGATTGGGAGCATTGAGGGAGCTTTCGGGAAGTCTTGTCATTTCAAAGCTGCAGAATGTTGTATGTGATAGGGATGCATTAGAAGCTAATATGAAGGATAAAAAGTACCTTGATGAGTTGAAGTTGCAGTGGGATTACAAGAATATCGATGCTGGTGTTGTTGTGCAAAATAGAAGGGATATACTCAGCAGCTTACAGCCACATACAAACCTCAAGAGACTCCATATTTATTCTTTTAGTGGTTTAAGCTTTCCAGCTTGGGTAGGAGATCCTTCATTCTTCAATCTTGTTTACCTGAAGCTTCACAATTGTAACAATTGTCCATCATTGCCACCACTCGGGCAGCTACCCTCTCTTAAACATCTTTCTATCTTACAAATGAAAGGAGTTAAAATGGTGGGTAGTGAATTTTATGGGAATGCTTCTTCCTCCAACACAATTGAGCCCTCCTTCCCGTCCCTACAAACTCTAAGATTCGAGAAGATGTACAACTGGGAGAAATGGTTATGTTGTGGATGCAGACGTGGAGAATTCCCTCGTCTTCAGGAGCTTTGCATAAATGAATCTCCCAAACTCACTGGGAAATTACCAAAACAGCTTCGTTCATTGAAGAAACTTGAAATCATTGGTTGTGAGTTGCTTGTGGGCTCCCTCCGAGCTCCTCAAATCCGTGAATGGAAAATGTCGTATTCTGGTAAATTTCGGTTGAAAAGGCCAGCTTGTGGGTTCACTAATCTCCAAACTTCAGTAATTGAAATTTCAGACATTTCTCAATTGGAGGAACTACCACCACGAATACAGACGCTATTCATTAGAGAATGTGATTCGATAGAGTGGATCCCACCATCCATTCCTTGA 2592 0.424 MSNNSFNHWKLRLNQSFLVWRLASREVVSFIRGQKLSDALLKKLERKLLVVHAVLNDAEVKQFTNPYVKKWLVLLKEAVYDAEDILDEITTEALRHKVEAAESQTSTSQVGNIMDMSTWVLAPFYGQGIESRVEEIIDRLEDMARDRDVLGLKEGVGEKLAQRWPSTSLVDESLVYGRAQIKEEMVQLLLCNNARSTDAMGVISIVGMGGTGKTTLAQLLYNDQRVKEHFDLKAWVCVSEEFDPIRVTKTILEAINSSTSNTTDLNLLQVQLKERINMKKFLLVLDDVWNEDSCDWDTLRTPLIVGAKGSKIIVTTRSTKVASAMRAVHTHCLGGLSSEDGWSLFKKLAFENGDSSGHPQLEAIGEKIVHKCQGLPLAIKAMGSLLHSKVEAREWDDVLNSELWDLPTDAVLPALRLSYYYLPSHLKRCFSYCSIFPKDYKFEKEKLVLLWMAEGLLEQSKSKKRPEEVGNLYFEELLSKSFFQNSVSNESCFVMHDLVNDLAQLLPESVCNLYNLQTMMLLGCDYLVELPSRMEKLINLRYLDIRYTSSVKEMPSDICKLKNLQSLSTFIVGQNGGLRLGALRELSGSLVISKLQNVVCDRDALEANMKDKKYLDELKLQWDYKNIDAGVVVQNRRDILSSLQPHTNLKRLHIYSFSGLSFPAWVGDPSFFNLVYLKLHNCNNCPSLPPLGQLPSLKHLSILQMKGVKMVGSEFYGNASSSNTIEPSFPSLQTLRFEKMYNWEKWLCCGCRRGEFPRLQELCINESPKLTGKLPKQLRSLKKLEIIGCELLVGSLRAPQIREWKMSYSGKFRLKRPACGFTNLQTSVIEISDISQLEELPPRIQTLFIRECDSIEWIPPSIP* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1286 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 433 IPR027417 -
Vvi12g1286 863 Gene3D - 335 417 IPR042197 -
Vvi12g1286 863 PRINTS Disease resistance protein signature 275 289 - -
Vvi12g1286 863 PRINTS Disease resistance protein signature 776 792 - -
Vvi12g1286 863 PRINTS Disease resistance protein signature 202 217 - -
Vvi12g1286 863 PRINTS Disease resistance protein signature 372 386 - -
Vvi12g1286 863 Pfam NB-ARC domain 198 400 IPR002182 GO:0043531
Vvi12g1286 863 Pfam Rx N-terminal domain 35 102 IPR041118 -
Vvi12g1286 863 Gene3D Ribonuclease Inhibitor 501 626 IPR032675 -
Vvi12g1286 863 FunFam Probable disease resistance protein At1g61300 161 330 - -
Vvi12g1286 863 Gene3D - 418 500 IPR036388 -
Vvi12g1286 863 Gene3D Ribonuclease Inhibitor 634 863 IPR032675 -
Vvi12g1286 863 FunFam Probable disease resistance protein At1g63360 419 505 - -
Vvi12g1286 863 Gene3D - 159 330 IPR027417 -
Vvi12g1286 863 Gene3D - 22 121 - -
Vvi12g1286 863 PANTHER DISEASE RESISTANCE PROTEIN RP 506 789 IPR044974 GO:0006952
Vvi12g1286 863 SUPERFAMILY L domain-like 486 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1286 Vvi-Chr12 18903515 18910168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1286 203 436 WRKY Transcription Factor Family AT5G45050 26.908 1.83e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1286 - - vvi:100258269 957.592