Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1280 ATGGCTGGGGCTTTAGTTGGGGGAGCTTTCCTCTCGGCTTCTCTTCAAGTTCTATTTGACAGGTTGGCTTCTCGCGAGGTTGTGAGCTTCCTCCGGGGGCAGAAGCTCAGTGATGCGCTCCTGAAGAAGTTGGAAAGGAAGTTGCTGGTCGTCCATGCAGTGCTCAACGATGCTGAGGTCAAACAATTTACAGATCCATATGTGAAGAAGTGGCTGGTCTTGCTTAAAGAGGTTGTGTATGATGCGGAGGACATATTGGATGAGATCGCCACAGAGGCTTTGCGACACAAGATGGAAGCTGCGGAGTCCCAAACCAGCACAAGTCAGGTGGGTAACATCATGGACATGTCTACCTGGGTTCATGCCCCATTTGACAGTCAGAGCATAGAAAAGAGGGTGGAGGAGATCATTGATAGACTTGAAGATATGGCACGAGACAGAGCCGTCCTTGGGTTGAAAGAAGGTGTTGGCGAGAAACTGTCACAAAGGTGGCCTTCTACTTCTTTGGTGGATGAATCTCTTGTCTATGGCAGGGATGATGAAAAACAGAAGATGATTAAACAGGTGTTGTCTGATAATGCAAGGAGGGATGAGATAGGTGTGATTTCCATAGTGGGCATGGGCGGCCTTGGCAAGACCACACTTGCTCAGCTTCTATATAATGACCCAAGGGTGATGGAACACTTCGATTTGAAGGCATGGGTTTGTGTTTCCGAAGAATTTGATCCTATTAGAGTTACAAAAACAATTCTGGAGGAGATTACTTCATCCGCTTTCGAGACAAATAACCTAAATCAGCTTCAAGTTAAACTGAAAGAGAGAATTAATACGAAGAAATTTCTACTTGTCTTGGATGATGTTTGGAACGAGGACTCTAGTAACTGGGCTATGCTACAAACTCCACTCAAAGGCGGGGCAAAGGGAAGCAAGATTGTTGTAACGACCCGCAGCACCAATGTTGCAGCAGTTATGCGCGCTGTTTATTCTCAATGTCTTGGTGAACTATCCTCTGAAGATTCCTGGTCTCTGTTTAGAAAACTCGCATTTGAAAATGGAGACTCGAGTGCGTATCCACAACTAGAAGCAATTGGTAAGAAGATTGTGGACAAGTGCCAAGGTTTGCCACTAACTGTAAAAACAGTGGGGGGCCTTTTACATTCTGAGGTTGAAGCGAGGAAATGGGATGATATACTAAACTGCCAAATATGGGATTTGTCCACTGATACAGTTCTTCCTGCATTAAGATTGAGTTACAATTATCTGCCTTCACATCTAAAGCAATGTTTTGCCTATTGCTCAATTTTTCCCAAGGACTACGAATTGGAGAAAGAGCAGCTAATTTTGTTATGGATGGCTGAAGGTCTTTTACAAGAATCCAAAGGCAAGAGAAGAATGGAAGAGGTAGGTGACTTGTACTTTCACGAGCTTTCATCGAAGTCATTTTTTCAAAATTCAAAAAGACTCGTCATTTATCATATTTTCCTAGAAAATATAATACCTTTGATAGATATGGAACACTTTCTGAATTTAAGTGTTTGCGAACATTTTTATCATTGGGGATTTACAAGTTTGGCTATAGGGTTGGCTACTTAA 1593 0.4306 MAGALVGGAFLSASLQVLFDRLASREVVSFLRGQKLSDALLKKLERKLLVVHAVLNDAEVKQFTDPYVKKWLVLLKEVVYDAEDILDEIATEALRHKMEAAESQTSTSQVGNIMDMSTWVHAPFDSQSIEKRVEEIIDRLEDMARDRAVLGLKEGVGEKLSQRWPSTSLVDESLVYGRDDEKQKMIKQVLSDNARRDEIGVISIVGMGGLGKTTLAQLLYNDPRVMEHFDLKAWVCVSEEFDPIRVTKTILEEITSSAFETNNLNQLQVKLKERINTKKFLLVLDDVWNEDSSNWAMLQTPLKGGAKGSKIVVTTRSTNVAAVMRAVYSQCLGELSSEDSWSLFRKLAFENGDSSAYPQLEAIGKKIVDKCQGLPLTVKTVGGLLHSEVEARKWDDILNCQIWDLSTDTVLPALRLSYNYLPSHLKQCFAYCSIFPKDYELEKEQLILLWMAEGLLQESKGKRRMEEVGDLYFHELSSKSFFQNSKRLVIYHIFLENIIPLIDMEHFLNLSVCEHFYHWGFTSLAIGLAT* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1280 530 PRINTS Disease resistance protein signature 201 216 - -
Vvi12g1280 530 PRINTS Disease resistance protein signature 371 385 - -
Vvi12g1280 530 PRINTS Disease resistance protein signature 274 288 - -
Vvi12g1280 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 432 IPR027417 -
Vvi12g1280 530 Pfam NB-ARC domain 183 399 IPR002182 GO:0043531
Vvi12g1280 530 Gene3D - 417 499 IPR036388 -
Vvi12g1280 530 FunFam Probable disease resistance protein At1g63360 418 499 - -
Vvi12g1280 530 FunFam Probable disease resistance protein At1g61300 160 328 - -
Vvi12g1280 530 Pfam Rx N-terminal domain 10 103 IPR041118 -
Vvi12g1280 530 Coils Coil 126 146 - -
Vvi12g1280 530 Gene3D - 16 129 - -
Vvi12g1280 530 Gene3D - 334 416 IPR042197 -
Vvi12g1280 530 PANTHER DISEASE RESISTANCE PROTEIN RP 41 499 IPR044974 GO:0006952
Vvi12g1280 530 Gene3D - 158 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1280 Vvi-Chr12 18771329 18773036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1280 175 382 WRKY Transcription Factor Family AT5G45050 26.728 3.62e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1280 - - vvi:100241796 908.672