Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1278 ATGGCTGGGGCTTTAGTTGGGGGAGCTTTCCTCTCCGCTTCTCTTCAAGTTCTATTTGACAGGTTGGCTTCTCGCGAGGTTGTGAGCTTCATCCGGGGGAAGAAGCTCAGTGATGCGCTCCTGAAGAAGTTGGAAAGGAAGTTGCTGGTCGTCCATGCAGTGCTCAACGATGCTGAGGTCAAACAATTTACAGATCCATATGTGAAGAAGTGGCTGGTCTTGCTTAAAGAGGCTGTGTATGATGCGGAGGACATATTGGATGAGATCGCCACAGAGGCTTTGAGACATAAGATGGAAGCTGCGGAGTCCCAAACCAGCACAAGTCAGGTGGGTAACATCATGGACATGTCTACCTGGGTTCATGCCCCATTTGACAGTCAGAGCATAGAAAAGAGGGTGGAGGAGATCATTGATAGACTTGAAGATATGGCACGAGACAGAGCCGTCCTTGGGTTGAAAGAAGGTGTTGGCGAGAAACTGTCACAAAGGTGGCCTTCTACTTCTTTGGTGGATGAATCTCTTGTCTATGGCAGGGATGATGAAAAACAGAAGATGATTGAACAGGTGTTGTCTGATAATGCAAGGAGGGATGAGATAGGTGTGATTTCCATAGTGGGCATGGGCGGCCTTGGCAAGACCACACTTGCTCAGCTTCTATATAATGACCCAAGGGTGATGGAACACTTCGATTTGAAGGCATGGGTTTGTGTTTCCGAAGAATTTGATCCTATTAGAGTTACAAAAACAATTCTGGAGGAGATTACTTCATCCACTTTCGAGACAAATAACCTAAATCAGCTTCAAGTTAAACTGAAAGAGAGAATTAATACGAAGAAATTTCTACTTGTCTTGGATGATGTTTGGAACGAGGACTCTAGTAACTGGGCTATGCTACAAACTCCACTCAAAGGCGGGGCAAAGGGAAGCAAGATTGTTGTAACGACCCGCAGCACCAATGTTGCAGCTGTTATGCGCGCTGTTTATTCTCATTGTCTTGGTGAACTATCCTCTGAAGATTCCTGGTCTCTGTTTAGAAAACTCGCATTTGAAAATGGAGACTCGAGTGCGTATCCACAACTAGAAGCAATTGGTAAGAAGATTGTGGACAAGTGCCAAGGTTTGCCACTAGCTGTAAAAGCAGTGGGGGGCCTTTTACATTCTGAGGTTGAAGCGAGGAAATGGGATGATATACTAAACAGCCAAATATGGGATTTGTCCACTGATACAGTTCTTCCTGCATTGAGATTGAGTTACAATTATCTGCCTTCACATCTAAAGCAATGTTTTGCTTATTGCTCAATTTTTCCCAAGGACTACGAATTGGAGAAAGAGAAGCTAATTTTGTTATGGATGGCTGAAGGTCTTTTACAAGAATCAAAAGGCAAGAGAAGAATGGAAGAGGTAGGTGACTTGTACTTTCACGAGCTTTTATCGAAGTCGTTTTTTCAAAATTCAGTTTGGAAAAAGAAGACACACTTTGTAATGCATGACCTAATTCATGACTTGGCTCAACTGGTGTCTGGAGAATTTTCTGTTAGTTTGGAGGATGGTCGGGTATGCCAAATCTCAGAAAAGACTCGTCATTTATCATATTTTCCGAGAGAATATAATAGCTTTGATAGATATGGAACACTTTCTGAATTTAAGTGTTTGCGAACATTTTTACCATTGAGGGTTTACATGTTTGGCTACTTAAGTAATAGAGTTTTACACAATCTATTATCGGAAATTAGGTGCTTGCGGGTGTTGTGTTTGCGTGGCTATGGTATTGTTAATTTGCCCCATTCAATTGGCAAGTTACAACATTTGCGCTACTTGGATCTCTCTTATGCTTTGATTGAAAAATTACCTACATCAATATGTACTTTGTACAATTTACAAACATTGATATTGTCAATGTGTTCGAATCTATATGAATTGCCTTCAAGAATCGAAAATTTGATTAATTTGTGTTATCTTGACATTCATCGTACCCCACTAAGAGAGATGCCAAGTCATATTGGCCATTTAAAATGTTTGCAAAACTTGAGTGATTTCATTGTGGGGCAAAAGAGCAGGTCGGGGATTGGAGAATTGAAGGAACTTTCAGATATAAAGGGAACACTTAGAATTTCAAAGTTGCAGAATGTGAAATGTGGCAGGGATGCAAGAGAAGCCAATTTGAAGGACAAGATGTACATGGAGGAGTTAGTGTTGGATTGGGATTGGAGAGCAGATGATATTATACAAGATGGAGACATAATTGATAATCTTCGGCCACATACAAACCTAAAGAGACTCTCTATTAATCGTTTTGGTGGTTCGAGATTTCCAACATGGGTAGCAAATCCTTTTTTCTCTAATCTCCAGACCCTAGAGCTTTGGAAATGTAAAAATTGCTTATCATTGCCACCACTTGGGCAGCTACCCTCTCTTGAACACTTACGGATCTCAGGAATGAATGGAATAGAGAGGGTGGGTAGTGAGTTTTATCATTATGGGAATGCTTCTTCCTCCATCGTAGTTAAGCCTTCCTTCCCATCCTTACAAACTCTAATATTTGAGTGCATGCATAATTGGGAGAAATGGTTGTATTGTGGATGCAGACGTGGAGAATTCCCTCGTCTCCAGGAGCTTTATATAATCAACTGTCCAAAACTCACTGGGAAATTACCAAAACAGCTTCGATCCTTGAAGAAACTTGAAATTGTTGGATGTCCGCAGCTGCTTGTGCCTTCACTCAGAGTCCCTGCAATCAGTGAATTGACGATGGTCGATTGTGGTAAATTACAGTTGAAAAGGCCAGCTAGTGGCTTCACTGCTCTTCAATTCTCACGCGTTAAAATTTCAAACATCTCTCAGTGGAAGCAACTACCAGTGGGAGTGCATAGGCTCTCAATTACAGAATGTGATTCTGTGAAGACTCTAATAGAAGAGGAACCGCTCCAGAGCAAAACTTGTCTTCTCAAATATTTGGAAATCACATATTGTTGTTTGTCTAGATCCTTGCGCAGAGTTGGTTTACCCACTAATGCATTGGAATCACTAAAAATCTCTCACTGTTCCAAGCTAGAGTTTCTCCTATCTGTGTTGTTGAGATGCCACCACCCTTTCCTAAAAAATATACACATCAGAGATAACACCTGTGATTCTCTTTCATTATCCTTCTCCTTAAGCATCTTCCCAAGATTGCGTTGTTTTGAAATCAGTAAGCTTCAGGGGCTTGAATTCCTCTATATCTCCATTTCAGAGGGGGATCCCACATCTCTTAATTATTTGAATATCTATGAGTGCCCTGATCTTGTATATATTGAATTGCCGGCTCTCGACTCAGCAAGGTATGAGATCTCCAGATGCTTGAAGCTCAAGTTATTGAAGCACACCCTCTTAACTTTGCGGTGTTTGAGGTTATTTCATTGTCCAGAATTGTTGTTTCAGAGGGACGGCTTGCCCTCCAACCTACGTGAACTTGAAATTTCATCCTGCGACCAACTCACATCTCAGGTGGACTGGGGTTTGCAAAGACTGGCCTCTCTTACAACATTCAATATCAGGGGTGGATGCCAAGAGATTCATTCTCTTCCCTGGGAGTGCCTACTGCCCTCCACAATTACCACTCTCAGAATTGAACGACTTCCAAACCTCAAGTCTCTGGACAGTAAGGGGCTTCAACAACTTACCTCTCTCTCAAACTTACACATTGGCGACTGCCCTGAGTTCCAATCCTTTGGAGAAGAGGGGCTTCAACATCTCACCTCCCTCATAACATTATCCATTAGCAATTGTTCTGAGCTCCAATCCTTTGGAGAAGAGGGGCTTCAACATCTCACCTCCCTCGAAACATTATCCATTTGCTGCTGCCCTGAGCTCAAATCTTTAACAGAAGCAGGTCTTCAACACCATAGCTCACTTGAAAAATTGCACATCTCCGGCTGCCCGAAGCTCCAATACCTGACGAAAGAGAGACTGCCAAACTCCCTCTCTTCTCTGGTTGTTTACAAATGCTCTTTGCTGGAAGGTCTCTGCCAATTTGGGAAAGGCCAAGATTGGCAGTATGTAGCTCACATTCCACACATAATCATCAACGATGTGTTATACTGA 4080 0.4223 MAGALVGGAFLSASLQVLFDRLASREVVSFIRGKKLSDALLKKLERKLLVVHAVLNDAEVKQFTDPYVKKWLVLLKEAVYDAEDILDEIATEALRHKMEAAESQTSTSQVGNIMDMSTWVHAPFDSQSIEKRVEEIIDRLEDMARDRAVLGLKEGVGEKLSQRWPSTSLVDESLVYGRDDEKQKMIEQVLSDNARRDEIGVISIVGMGGLGKTTLAQLLYNDPRVMEHFDLKAWVCVSEEFDPIRVTKTILEEITSSTFETNNLNQLQVKLKERINTKKFLLVLDDVWNEDSSNWAMLQTPLKGGAKGSKIVVTTRSTNVAAVMRAVYSHCLGELSSEDSWSLFRKLAFENGDSSAYPQLEAIGKKIVDKCQGLPLAVKAVGGLLHSEVEARKWDDILNSQIWDLSTDTVLPALRLSYNYLPSHLKQCFAYCSIFPKDYELEKEKLILLWMAEGLLQESKGKRRMEEVGDLYFHELLSKSFFQNSVWKKKTHFVMHDLIHDLAQLVSGEFSVSLEDGRVCQISEKTRHLSYFPREYNSFDRYGTLSEFKCLRTFLPLRVYMFGYLSNRVLHNLLSEIRCLRVLCLRGYGIVNLPHSIGKLQHLRYLDLSYALIEKLPTSICTLYNLQTLILSMCSNLYELPSRIENLINLCYLDIHRTPLREMPSHIGHLKCLQNLSDFIVGQKSRSGIGELKELSDIKGTLRISKLQNVKCGRDAREANLKDKMYMEELVLDWDWRADDIIQDGDIIDNLRPHTNLKRLSINRFGGSRFPTWVANPFFSNLQTLELWKCKNCLSLPPLGQLPSLEHLRISGMNGIERVGSEFYHYGNASSSIVVKPSFPSLQTLIFECMHNWEKWLYCGCRRGEFPRLQELYIINCPKLTGKLPKQLRSLKKLEIVGCPQLLVPSLRVPAISELTMVDCGKLQLKRPASGFTALQFSRVKISNISQWKQLPVGVHRLSITECDSVKTLIEEEPLQSKTCLLKYLEITYCCLSRSLRRVGLPTNALESLKISHCSKLEFLLSVLLRCHHPFLKNIHIRDNTCDSLSLSFSLSIFPRLRCFEISKLQGLEFLYISISEGDPTSLNYLNIYECPDLVYIELPALDSARYEISRCLKLKLLKHTLLTLRCLRLFHCPELLFQRDGLPSNLRELEISSCDQLTSQVDWGLQRLASLTTFNIRGGCQEIHSLPWECLLPSTITTLRIERLPNLKSLDSKGLQQLTSLSNLHIGDCPEFQSFGEEGLQHLTSLITLSISNCSELQSFGEEGLQHLTSLETLSICCCPELKSLTEAGLQHHSSLEKLHISGCPKLQYLTKERLPNSLSSLVVYKCSLLEGLCQFGKGQDWQYVAHIPHIIINDVLY* 1360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1278 1359 Gene3D Ribonuclease Inhibitor 1102 1238 IPR032675 -
Vvi12g1278 1359 Gene3D Ribonuclease Inhibitor 1239 1332 IPR032675 -
Vvi12g1278 1359 FunFam Probable disease resistance protein At1g61300 161 328 - -
Vvi12g1278 1359 Gene3D - 18 122 - -
Vvi12g1278 1359 Pfam NB-ARC domain 183 418 IPR002182 GO:0043531
Vvi12g1278 1359 Gene3D Ribonuclease Inhibitor 545 944 IPR032675 -
Vvi12g1278 1359 SUPERFAMILY L domain-like 1118 1348 - -
Vvi12g1278 1359 PRINTS Disease resistance protein signature 371 385 - -
Vvi12g1278 1359 PRINTS Disease resistance protein signature 201 216 - -
Vvi12g1278 1359 PRINTS Disease resistance protein signature 886 902 - -
Vvi12g1278 1359 PRINTS Disease resistance protein signature 274 288 - -
Vvi12g1278 1359 SUPERFAMILY L domain-like 494 902 - -
Vvi12g1278 1359 SMART LRR_CC_2 866 894 IPR006553 -
Vvi12g1278 1359 SMART LRR_CC_2 1269 1297 IPR006553 -
Vvi12g1278 1359 SMART LRR_CC_2 1219 1247 IPR006553 -
Vvi12g1278 1359 SMART LRR_CC_2 1144 1172 IPR006553 -
Vvi12g1278 1359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 432 IPR027417 -
Vvi12g1278 1359 Gene3D - 334 416 IPR042197 -
Vvi12g1278 1359 SUPERFAMILY RNI-like 837 1098 - -
Vvi12g1278 1359 Coils Coil 126 146 - -
Vvi12g1278 1359 Gene3D - 417 505 IPR036388 -
Vvi12g1278 1359 FunFam Probable disease resistance protein At1g63360 418 505 - -
Vvi12g1278 1359 Gene3D - 158 329 IPR027417 -
Vvi12g1278 1359 PANTHER DISEASE RESISTANCE PROTEIN RP 41 901 IPR044974 GO:0006952
Vvi12g1278 1359 Pfam Rx N-terminal domain 10 102 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1278 Vvi-Chr12 18720504 18724583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1278 175 851 WRKY Transcription Factor Family AT5G45050 23.398 5.08e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1278 - - vvi:100258269 1781.53