Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1271 ATGGAAATGAAAGTTCCTCATCAGCTCTACAGTCTGTACTCAGCCTCCAACATGATCAAGAGGGAAGATCATAGCCGGAAAAGTCTGAAAAAGCCAGAAGAAAAGCAGCATGATGACTCCAAACCTTTCAACTCCCGGAATCTGTCAAAGGTCATTCTCCCTCCCTTAGGTGTCTCAAGTTATAACCAAAATCCGTTAGCGCCCAAAGGATGGATCATCTCACCAATGGATTCAAGATACAGGTGTTGGGAGACATTTATGGTGGTTTTAGTAGCCTACTCTCTATGGATTTACCCTTTTCAAGTTGCATTTCTGAAAGCCTCTCCAAATAGACAACTATATATCACGGATAATGTCGTTGATCTATTTTTCGCTGTTGACATCGTCTTAACATTTTTTGTCGCTTACATTGATCGAAGAACTCAGCTACTTGTTTGTGACTGGAGAAAGATTGCAGTGAGGTACCTGTCAACATGGTTTCTGATGGATATGGCATCAACTATGCCTTTTGAGGCACTGGGCTCCTTGATCACTGGCAAACAGAAAGTGGGTCTCTCCTACTCCCTCTTGGGTCTGCTCAGATTCTGGCGTCTCCGCCGTGTCAAGCAACTCTTCACCAGGCTTGAGAAGGACATCAGATTCAGCTATTTCTGGGTTCGATGTGCTAGGCTATTATCAGTGACATTGTTTCTGGTCCACTGTGCTGGGTGCCTATACTACTTGCTAGCTGATCGATACCCGCATCAAGGAAAGACGTGGATTGGAGCCGTTATACCGAATTTTAGAGAGACAAGCCTTTGGATCAGATATATTTCAGCCCTGTATTGGTCCATCACCACCATGACCACTGTTGGCTATGGTGACATGCATGCTGTGAACACTATGGAGATGATCTTCATCATTTTCTACATGCTATTCAACCTTGGCTTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTTGTTGAAGGCACTAGACGTACTATGGAATTTAGAAATAGCATAGAAGCAGCATCAAACTTTGTATGCAGAAACCGGTTGCCTCCAAGATTGAAAGAGCAGATACTGGCTTATATGTGTTTGAGATTTAAGGCTGAGAGCTTGAATCAGCACCAACTAATTGAACAGCTGCCCAAATCCATATGCAAAAGCATCTGCCAGCATTTATTCTTGCCAACTGTGGAGAAGGTCTATCTTTTCAAGGGAATCTCAAGAGAAATACTCTTGCTCCTGGTTGCAAAGATGAAGGCTGAGTACATACCTCCTAGAGAAGATGTTATAATGCAGAATGAGGCGCCAGATGACGTTTACATAATTGTATCTGGAGAAGTTGAAATTATTGATTATGAGGGAGAGAAAGAGCATGTTGTTGGGACTCTACAGTCTGCAGACATGTTTGGAGAAGTTGGGGCACTTTGCTGCAGACCTCAAACCTATACGTTCCGAACCAAGACCCTTTCACAACTCCTGAGGCTGAAGACCAGTGCACTGATAGAAGCAATGCAGACTAAGAAGGAAGACAATGTGATTATCCTTAAAAACTTTCTTCAGCATCACAAAAGGCTTAAGGATCTAAACATTGGAGATTTGCTGGTGGAGAATGGGGAAGAAGATGTTAACCCCAACATGGCTTTCAATTTACTGACTGTTGCCAGCACTGGCAACGCAGCCTTTCTTGATGAGCTTCTCAAGGCAAAATTGGACCCTGATATTGGGGACTCCAAAGGAAGAACCCCATTGCACATAGCAGCATCAAAAGGGCATGAAGATTGTGTAATGGTACTTCTCAAACATGCGTGCAATGTACATGTCCGAGATCCCTACACTTCTGGTGATCTTTTGTGCACTGCTGCAAAGAGAAATGACCTAACAGCGATGAAGGAGCTCCTGAAACAAGGTTTAAACATAGACTCGAAGAATCGCCAAGGGTTAACAGCAATCCAGATTGCCATGGCAGAAGACCACACAGATATGGTAAAGCTACTTGTAATGAATGGCGCAGATGTTATCCATGCCAATACCTATGAGTTCTCTTCAGAAACTCTGAATGAAATGCTGCAAAAGCGAGAGATGGGACACCGAATTATGGTGCCTGATACCTTGCCTACTGATCATGAAACGTTGTTGAGGGACCAAGGAGGAGAAAAGGAGTTTAATACTAATGGAGGATTCAAAGGAACAAATGTTCCAAGGGTGAGCATATATAGAGGCCATCCTCTGCAGAGAAAAGAGAGCTGCTGCACTGAAGCTGGCCGGCTGATTAGGTTGCCAAACTCATTAATGGAGCTCAAGGCCATTGCAGGTGAGAAGCTTGGATTTGATGCAAGAAATGCAATGGTAACGAACGAAGAAGGAGCAGAAATCGACTCCATTGAAGTTATTAGAGACAATGATACGCTTTTCCTAGTTGAAGATCCAAACTCCCTGATGTAA 2436 0.4347 MEMKVPHQLYSLYSASNMIKREDHSRKSLKKPEEKQHDDSKPFNSRNLSKVILPPLGVSSYNQNPLAPKGWIISPMDSRYRCWETFMVVLVAYSLWIYPFQVAFLKASPNRQLYITDNVVDLFFAVDIVLTFFVAYIDRRTQLLVCDWRKIAVRYLSTWFLMDMASTMPFEALGSLITGKQKVGLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWVRCARLLSVTLFLVHCAGCLYYLLADRYPHQGKTWIGAVIPNFRETSLWIRYISALYWSITTMTTVGYGDMHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFLPTVEKVYLFKGISREILLLLVAKMKAEYIPPREDVIMQNEAPDDVYIIVSGEVEIIDYEGEKEHVVGTLQSADMFGEVGALCCRPQTYTFRTKTLSQLLRLKTSALIEAMQTKKEDNVIILKNFLQHHKRLKDLNIGDLLVENGEEDVNPNMAFNLLTVASTGNAAFLDELLKAKLDPDIGDSKGRTPLHIAASKGHEDCVMVLLKHACNVHVRDPYTSGDLLCTAAKRNDLTAMKELLKQGLNIDSKNRQGLTAIQIAMAEDHTDMVKLLVMNGADVIHANTYEFSSETLNEMLQKREMGHRIMVPDTLPTDHETLLRDQGGEKEFNTNGGFKGTNVPRVSIYRGHPLQRKESCCTEAGRLIRLPNSLMELKAIAGEKLGFDARNAMVTNEEGAEIDSIEVIRDNDTLFLVEDPNSLM* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1271 811 PRINTS EAG/ELK/ERG potassium channel family signature 117 127 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1271 811 PRINTS EAG/ELK/ERG potassium channel family signature 296 307 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1271 811 PRINTS EAG/ELK/ERG potassium channel family signature 128 137 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1271 811 PRINTS EAG/ELK/ERG potassium channel family signature 270 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1271 811 PRINTS EAG/ELK/ERG potassium channel family signature 314 323 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi12g1271 811 SMART cnmp_10 400 517 IPR000595 -
Vvi12g1271 811 MobiDBLite consensus disorder prediction 21 47 - -
Vvi12g1271 811 SUPERFAMILY Ankyrin repeat 541 675 IPR036770 -
Vvi12g1271 811 Gene3D - 81 323 - -
Vvi12g1271 811 PANTHER POTASSIUM CHANNEL AKT1 45 805 IPR045319 GO:0005249|GO:0006813
Vvi12g1271 811 SMART ANK_2a 493 528 IPR002110 GO:0005515
Vvi12g1271 811 SMART ANK_2a 643 673 IPR002110 GO:0005515
Vvi12g1271 811 SMART ANK_2a 576 605 IPR002110 GO:0005515
Vvi12g1271 811 SMART ANK_2a 544 572 IPR002110 GO:0005515
Vvi12g1271 811 SMART ANK_2a 610 639 IPR002110 GO:0005515
Vvi12g1271 811 Pfam Cyclic nucleotide-binding domain 420 504 IPR000595 -
Vvi12g1271 811 ProSiteProfiles cAMP/cGMP binding motif profile. 400 519 IPR000595 -
Vvi12g1271 811 ProSiteProfiles Ankyrin repeat region circular profile. 643 670 - -
Vvi12g1271 811 Gene3D - 612 682 IPR036770 -
Vvi12g1271 811 Pfam Ankyrin repeats (3 copies) 527 607 IPR002110 GO:0005515
Vvi12g1271 811 Pfam Ankyrin repeats (3 copies) 615 670 IPR002110 GO:0005515
Vvi12g1271 811 Pfam KHA, dimerisation domain of potassium ion channel 731 803 IPR021789 -
Vvi12g1271 811 MobiDBLite consensus disorder prediction 21 44 - -
Vvi12g1271 811 Gene3D - 535 611 IPR036770 -
Vvi12g1271 811 FunFam Potassium channel KAT2 388 524 - -
Vvi12g1271 811 ProSiteProfiles Ankyrin repeat region circular profile. 576 607 - -
Vvi12g1271 811 Pfam Ion transport protein 81 329 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi12g1271 811 ProSiteProfiles KHA domain profile. 732 811 IPR021789 -
Vvi12g1271 811 PRINTS Ankyrin repeat signature 577 592 IPR002110 GO:0005515
Vvi12g1271 811 PRINTS Ankyrin repeat signature 659 673 IPR002110 GO:0005515
Vvi12g1271 811 SUPERFAMILY cAMP-binding domain-like 327 518 IPR018490 -
Vvi12g1271 811 FunFam Potassium channel KAT3 82 324 - -
Vvi12g1271 811 ProSiteProfiles Ankyrin repeat profile. 643 675 IPR002110 GO:0005515
Vvi12g1271 811 Gene3D Jelly Rolls 367 529 IPR014710 -
Vvi12g1271 811 ProSiteProfiles Ankyrin repeat profile. 576 608 IPR002110 GO:0005515
Vvi12g1271 811 SUPERFAMILY Voltage-gated potassium channels 75 323 - -
Vvi12g1271 811 CDD CAP_ED 400 513 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1271 Vvi-Chr12 18664076 18670558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1271 15 581 Ion Channels AT4G22200 76.140 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1271 K21867 - vvi:100261806 1608.96