Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1269 ATGGGCAACGGCAGCAACTTCAGCTGGGCTTTGAGCCTGCTGACGACTCTCTGTCTCCTCTCTGTCTCCGCCACCACCGCTCTCTCTCAATCCTCCAACGCCTCCGCATGTCCCATGGACTTCAACTACGTTCTCAGAATCTCATGGAACTCCTCAAACTGCCACAACTTCGTCTCACAGGGCAACACCAGCGTCAACAGCAAAAGCTCATGTTGCACAACTCTCCTCAGCCTCTTTGCAGTCTCACTCGCTCAACACCTCAAAGAGACCTCCCTCTTTAATCTCCCGGACGTCTCCACCTCCCAATCCTGTCTCCACGATTTTCAATCCAAGCTCACCTCTCTCCCCCTGGCCAACAACCTCGCCTCTTCTTGCTTTGATCCTCAGCAGTTCGTGATTGGACCTGACATATGTGCCGGTGTGCAGAACATCTCCGACTGGGTGGCGAAACTCGGCCCCTCCACCGCCCTCGACAGCAGCTGCCGGGCGGATCTGACCGACCTGACAGCATGTGACGCCTGCGTGAACGCTGGGTTCGAGGTTCAATCCAAGTTGATTGAGATTGATGGCAACAAGTCTCATTCTACGGATTGCTTTTATTTCACGGTTTTGTATGCTGCTGGAATTGTAAATGAGGCTGGGCCTGAGAGTACTGGCGCAATGTCGTGTGTACTCGCAGTACCTTTGAATTCTGATGAGGGGTCTAGTAGTAAGAGCCATTCGGCTCTGATTTTTGGGTTTACAGGGGCGGGTGTTGCTGTATTGGTGATGTCCTGCTTGTTGGGGCTGTACTTTTGGTGGGAGAGGAAGTGGGGGAAGAAGAGTAAGAGGAGTGGTTCAGGGTTTTTCGGAGTGGATTTGGAGGATTTGGGAGGGTCTAGGCCGCGGGTTAGGCCGAATACTGGTTCAATCTGGTTCAAAATTCCGGACCTTGAGAGGGCAACCGACAATTTTTCGCAGAAGAATTTCATTGGGCGAGGGGGGTTTGGTCTTGTTTACAAGGGGACTTTAGCAGATGGGAGCACTGTTGCAGTCAAGAAGATTATAGAGTCCGATATTCAGGTTGATGCAGACTTTTGTAATGAGATTGAGATCATTAGCAATTTGAAGCATCGGAATCTCGTTCCCCTTAGAGGTTGTTGTGTGGTTGATGGAGGTGAGGGTTATGATGACAGGGCAAGCCCGAGGTACCTTGTTTATGATTACATGCCAAATGGGAATCTTGATGACCATTTGTTTTCGAAATGGGAGAATGGAAATGGGAATGGAATGGGAAAGAAGCCACTGACATGGCCTCAGAGGAAGAGCATAATCTTGGATGTGGCAAAGGGGCTTGCTTATCTTCACTATGGAGTGAAACCCGCGATATATCATCGAGATATTAAGGCCACAAACATACTGTTGGATGCAGATATGAGAGCAAGAGTGGCCGATTTTGGGCTAGCGAAGCAGAGCAGAGAAGGGCAGTCTCATCTCACTACTAGAGTGGCCGGTACTCATGGGTACCTAGCCCCAGAGTATGCCCTCTATGGACAGCTGACTGAGAAGAGCGATGTTTATAGCTTTGGGGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTGTCATCAAGATCGCCTCGGGCATTTTTGATAACGGATTGGGCTTGGTCAATGGTGAAAGCTGGGAAAGCAGAAGAGGCTTTAGATGCTTCTTTGGTGAAAGATGGGGATTCATCAAATTCAAACCCAAAGGCGATAATGGAGAGATTTTTGCTGGTTGGGATTTTGTGTGCTCATGTTATGGTGGCTCTCAGGCCTACCATTTCAGATGCACTGAAAATGCTCGAAGGCGATGTTGAGGTTCCTGCCATTCCTGATAGGCCAGTGCCTCTTGGGCACCCTTCGTTTCTCACTGATGGGAATACGTTTAGCATATCACCAGCATTGAGCGGACCTAAATTACACACAGGAGACATGCTCAGGGAAGGACGTTTTAGAGGACAGCTGCAGGCTTGA 2007 0.4948 MGNGSNFSWALSLLTTLCLLSVSATTALSQSSNASACPMDFNYVLRISWNSSNCHNFVSQGNTSVNSKSSCCTTLLSLFAVSLAQHLKETSLFNLPDVSTSQSCLHDFQSKLTSLPLANNLASSCFDPQQFVIGPDICAGVQNISDWVAKLGPSTALDSSCRADLTDLTACDACVNAGFEVQSKLIEIDGNKSHSTDCFYFTVLYAAGIVNEAGPESTGAMSCVLAVPLNSDEGSSSKSHSALIFGFTGAGVAVLVMSCLLGLYFWWERKWGKKSKRSGSGFFGVDLEDLGGSRPRVRPNTGSIWFKIPDLERATDNFSQKNFIGRGGFGLVYKGTLADGSTVAVKKIIESDIQVDADFCNEIEIISNLKHRNLVPLRGCCVVDGGEGYDDRASPRYLVYDYMPNGNLDDHLFSKWENGNGNGMGKKPLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSRSPRAFLITDWAWSMVKAGKAEEALDASLVKDGDSSNSNPKAIMERFLLVGILCAHVMVALRPTISDALKMLEGDVEVPAIPDRPVPLGHPSFLTDGNTFSISPALSGPKLHTGDMLREGRFRGQLQA* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1269 668 PANTHER OS01G0750732 PROTEIN 60 619 - -
Vvi12g1269 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Vvi12g1269 668 ProSiteProfiles Protein kinase domain profile. 318 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1269 668 FunFam Receptor-like serine/threonine-protein kinase At4g25390 289 402 - -
Vvi12g1269 668 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 403 620 - -
Vvi12g1269 668 Pfam SPARK 32 199 IPR043891 -
Vvi12g1269 668 SMART serkin_6 318 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1269 668 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524
Vvi12g1269 668 SUPERFAMILY Protein kinase-like (PK-like) 297 613 IPR011009 -
Vvi12g1269 668 CDD STKc_IRAK 324 614 - -
Vvi12g1269 668 Gene3D Transferase(Phosphotransferase) domain 1 403 619 - -
Vvi12g1269 668 Pfam Protein kinase domain 319 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1269 668 Gene3D Phosphorylase Kinase; domain 1 295 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1269 Vvi-Chr12 18567609 18570257 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1269 25 658 Receptor kinase-like Gene Family AT1G11050 66.509 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vvi12g1269 Pkinase 5.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1269 - - vri:117926926 1288.86