Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1267 ATGCCAAATGGGAATCTTGATGACCATTTGTTTTCGAAATGGGAGAATGGGAATGGGAATGGAATGGGAAAGAAGCCATTGACATGGCCTCAGAGGAAGAGCATAATCTTGGATGTGGCAAAGGGGCTTGCTTATCTTCACTATGGAGTGAAACCCGCGATATATCATCGAGATATTAAGGCCACAAACATACTGTTGGATGCAGATATGAGAGCAAGAGTGGCTGATTTTGGGCTAGCAAAACAGAGCAGGGAAGGGCAGTCTCATCTCACTACTAGAGTGGCCGGTACTCATGGGTACCTAGCCCCAGAGTATGCGCTTTATGGACAGCTGACTGAGAAGAGCGATGTTTATAGCTTTGGGGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATTTGTCATCACGATCGCCGGGGGCATTTTTGATAACTGATTGGGCTTGGTCAATGGTGAAAGCTGGGAAAATAGAAGAGGCTTTAGATGCTTCTTTGTTGAAAGATGAGGATTCATCAAATTCGAACCCAAAGGTGATAATGGAGAGATTTTTGCTGGTTGGGATTTTGTGTGCTCATGTTATGGTGGCTCTCAGGCCTACCATTTCAGATGCACTGAAAATGCTTGAAGGCGATGTTGAGGTTCCTGCCATTCCCGATAGGCCAGTGCCTCTTGGGCACCCTTCGTTTTTCACTGATGGGAATACGTTTTCCATATCACCAGCATTGAGCGGACCTCAATTACACTCAGGAGACATGCTCAGGTAA 771 0.4578 MPNGNLDDHLFSKWENGNGNGMGKKPLTWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSRSPGAFLITDWAWSMVKAGKIEEALDASLLKDEDSSNSNPKVIMERFLLVGILCAHVMVALRPTISDALKMLEGDVEVPAIPDRPVPLGHPSFFTDGNTFSISPALSGPQLHSGDMLR* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1267 256 PANTHER OS01G0750732 PROTEIN 1 217 - -
Vvi12g1267 256 Gene3D Transferase(Phosphotransferase) domain 1 1 217 - -
Vvi12g1267 256 SUPERFAMILY Protein kinase-like (PK-like) 1 211 IPR011009 -
Vvi12g1267 256 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 1 218 - -
Vvi12g1267 256 Pfam Protein kinase domain 25 149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1267 256 ProSiteProfiles Protein kinase domain profile. 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g1267 256 ProSitePatterns Serine/Threonine protein kinases active-site signature. 54 66 IPR008271 GO:0004672|GO:0006468
Vvi12g1267 256 SMART serkin_6 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1267 Vvi-Chr12 18534189 18534959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1267 1 256 Receptor kinase-like Gene Family AT1G11050 82.490 4.38e-149 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vvi12g1267 Pkinase 3.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1267 - - vvi:100246443 519.235