Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1262 ATGTATGATTCTAGCTGGAGTTTAAAGGGGACTACCTTCCTCGGAATATCGACATTGCAAGAACTTGAAGAACAGCAAGTCATTCTAATTTCTATACATATGTCTTCTCCTCCTTTTAATAATCCCCATTATGAAGATAACAGTTGCCCATCCCTCCATTATGCTGATTTATGGTCACTTTTGCAAGAAATTGACATATCGGTACCTGTTGATGATCATAACTCTTTAGACCGGATGGATCCTATAATGTTCGAGCAAGAAAATTCGGCCATGGTGCAGTACTCCAGCCAAGAGAAAGGATTGGTTGGAGACAACCCCATTAATCCTGTAGCGTTCGACCAAGAAAATTCAACCATGGTGCAGTCCAGCAAGGAGAAAGGACAGGTTGGAGGCAAAACCAATTTGAAGACTGGTGAAAGAAACCGCAGAATCAAACACTCACAAGCTAAGAAGACACTGCTGAAACACATTGCAGATCAACAAGGGTCAAGTGTGCTTAGGAAAGAAAACCATAATGCCAAGGAGAGAGTACGAAGGATGCAGCTCAATGCATCTTACTTGGCTCTTCGTTCGTTGCTACCAGATGCTCGAAGATCAAAGAGATGGAGTTCACCGCGAATAATTGATAGAGTTCTTGAGTACATCCCTGAGCTGGAGAATGAGATAGAGAATCTCACTCTCAAGAAGGAAAACATGCTATCCTCCCTCGCAAACGAGCAAACTCACCAGAATCAGCCTTCAGACCTCCAAGTTCCCACGGTTTCAGTGACTGAAGTTAGAAAAGGTGAAGTAATCGTGCAAATATGCATGCAACGAGAACCAGGCAATGTGCTCTCAAATCTGATGCAGAATGTAGAGGGTGAAGGCATGAGGATCATGAGTGCTTCAAGTCTTCATGTTTGTGATGAACGAGTCTGCTACCACCTGCATATTCAGGTATGTATTTTACATAATTTTATGTGA 963 0.4258 MYDSSWSLKGTTFLGISTLQELEEQQVILISIHMSSPPFNNPHYEDNSCPSLHYADLWSLLQEIDISVPVDDHNSLDRMDPIMFEQENSAMVQYSSQEKGLVGDNPINPVAFDQENSTMVQSSKEKGQVGGKTNLKTGERNRRIKHSQAKKTLLKHIADQQGSSVLRKENHNAKERVRRMQLNASYLALRSLLPDARRSKRWSSPRIIDRVLEYIPELENEIENLTLKKENMLSSLANEQTHQNQPSDLQVPTVSVTEVRKGEVIVQICMQREPGNVLSNLMQNVEGEGMRIMSASSLHVCDERVCYHLHIQVCILHNFM* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1262 320 SMART finulus 172 224 IPR011598 GO:0046983
Vvi12g1262 320 Gene3D - 161 250 IPR036638 GO:0046983
Vvi12g1262 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 218 IPR011598 GO:0046983
Vvi12g1262 320 Pfam Helix-loop-helix DNA-binding domain 167 219 IPR011598 GO:0046983
Vvi12g1262 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 235 IPR036638 GO:0046983
Vvi12g1262 320 Coils Coil 208 235 - -
Vvi12g1262 320 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 141 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1262 Vvi-Chr12 18452797 18454628 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1262 156 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G71200 35.233 2.36e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi12g1262 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1262 - - vvi:100258265 620.157