Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1254 ATGGCTGAGGCTGTGGTGGGAGGAGCATTTCTCTCGGCTTCTCTTCAAGTTCTATTCGACAGGTTGGCTTCTCGTGAGGTTGTGAACTTCGTCCGGGGACAGAGATTCACCCCAGAACTCCTAAAGAAGATGGAGATAACATTGCTCACTGTCTATACAGTGCTTAACGATGCAGAGGTGAAGCAAATTACGAATCCACCGGTCACAAAGTGGGTAGAGGAGCTTAAACATGTTGTCTATGAAGCGGAGGATCTACTAGATGAGATTGCTACTGAAGCTTTAAGATGCAAGATGGAGTCTGATTCTCAAACTAGTGCAACTCAGGTATGGAGCATCATTTCTACCTCGCTTGATTCATTTGGTGAAGGGATAGAGTCCAGAGTAGAGGGCATCATTGATAGACTAGAATTTCTTGCACAGCAAAAAGATGTTCTTGGGTTGAAAGAAGGAGTAGGAGAGAAACGGTCACAAAGATGGCCATCAGCATCTTTGGTAGATGAATCTGGGGTGCACGGTAGGGGTGGTAGCAAAGAGGAGATAATTGAATTTTTACTGTGTGATAATCAAAGGGGCAATGAGGCATGTGTAATCTCCATAGTGGGCATGGGTGGTCTTGGTAAGACCACACTTAGTCAACTTGTGTATAATGATAAGAGACTGGACACACATTTTGGCCTCAAATCATGGGTATGTGTCTCAGATGAATTTGATCTTTTGAAAATTATGAAGGCAATTCTTAGACAAGTCAGTCCACTGAATTCCAAAGTGAAGGATCCAAATCTGCTTCAAGTTAGATTGAAGGAGAGTCTTAATGGAAAGAAATTTCTACTTGTTCTTGATGACGTTTGGAATGAAAACTATAATAACTGGGACCTGCTACACACTCCCCTCAAAGCTGGCTTCAAAGGAAGTAAAATTATTGTGACTACCCGTAGCGAGAAGGTTGCGCTAATCATGCGTGCCACTCGAATTCATCATCTGGGGCAGTTGCCATTTGAAGATTGCTGGTCTATTTTTGCTAAACATGCATTTGGAAGTGGAGATTCTAGTCTACATCCGAAATTAGAAGCAATTGGCAAAGAAATAGTGGGAAAATGTAATGGTTCCCCTTTGGCTGCAAAAATATTGGGGGGGATCTTGTATTGTAAGGTAGCAGAAGAGGAATGGGAGAATATATTGAACAGGGAAATGTGGAAGTTGCCGACTAATGAAATTTTTTCCTCTTTAAGATTGAGCTACTACTATCTTCCTTCACATTTAAAGCGTTGTTTTGCTTATTGTTCAATTTTTCCTAGGAATTATGAATTCCAAAAGGAGAAGCTGATTCTTTTGTGGATGGCAGAAGGGTTTTTGCAAGAACCAAGTAGCAAGAAAAGAGAAGAAGGGGTCTCTAAACTGGAGGAAGTGGGAGATAAGTACTTTAATGAACTGTTATCGAGGTCTTTTTTCCAGAAATCAAGTAACAATAGATCATGTTTTGTAATGCATGACCTCATGAATGACTTGGCTCAACTTGTGTCCGGAGAATTTGGTATCCGATTGGAGAATGATGAGAGGCATGAAACTCTTGAAAAGGTCCGTCACTTATCATATTTTAGAACAGAATGTGATGCCTTTGGGAGATTTGAGGCCTTTAACGACATAAATTGTCTTCGGACCTTCTTATCTTTACAAATTCAAGCTTCTGGATCAGTCTCCCACTTGAGTAAAAGAGTTTCACATGATCTACTACCAACATTGAGATGGCTGCGGGTATTGTCTTTGTGTGATTATAAAATAATTGATTTGCCTGATTCAATAGGTAATCTGAAACATTTACGGTATCTGGATCTTTCCAATTGTATATTCCTTATAAGGTTACCTAATTCAATAGGTACCTTGTACAATTTACAAACAATGATATTATCAGGATGCTTTTCTCTCATTGAATTGCCTGTGGGGATGGGCAAATTGATTAACTTGCGTCATCTTGATATTACTGATACCAAAGTAACAAAGATGCCTGCTGATATAGGTCAACTAAAAAGTTTGCAGACACTGAGTACTTTTATGGTGGGCCAAGGAGATCGGTCAAGTATTGGAAAGTTAAGGGAGCTTCCCTATATTAGTGGAAAGCTTCAGATTGCGGGGCTGCAGAATGTGTTGGGTTTTAGGGATGCCTTGGAGGCTAATTTGAAGGACAAGCGGTACCTGGATGAGTTACTTCTGCAGTGGAATCACAGTACTGACGGTGTTCTGCAACATGGAACAGACATACTTAACAAGTTACAGCCTCATACAAACTTAAAGAGACTTTCCATTAATTGCTTTGGTGGTACAAGATTTCCAGTTTGGCTTGGAGATCTTTCATTCTTCAATATTGTTACCCTGCATCTCTACAAATGTAAACACTGCCCATTCTTGCCGCCTCTTGGGCAGCTTCCCTCTCTTCAAGTTCTTGATATAAGAGGGATGAACGGAGTCGAAAGGGTGGGAAGTGAGTTCTATGGGAATGATTATCTACCAGCTAAGCCTTTCACATCCCTAGAAACCCTAAGATTTGAAGATTTGCCTGAGTGGAAAGAATGGTTATCTTTTAGAGGTGAAGGTGGAGAGTTCCCTCGTCTCCAGGAGTTCTACATAAAGAACTGTCCCAAGCTTACAGGGGACTTGCCAATCCAGCTCCCTTCCTTGATAAAACTTGAGATTGAAGGATGTAATCAGCTTCTGGTTTCACTTCCAAGGTTTCCAGCAGTACGCAAATTGAAGATGCTCAAATGTGGCAACGTGCTGTCCCAGATCCAATATTCTGGCTTCACTTCTCTTGAGAGTTTGGTAGTTTCAGACATCTCACAGTTGAAAGAATTGCCCCCAGGACTGCGCTGGCTCTCCATTAATAATTGTGAGTCTGTGGAGTCTCCACTCGAGAGAATGCTGCAAAGCAACACTCATCTTCAATATTTGGAAATAAAGCATTGCTCTTTTTCTAGATTCTTGCAGAGAGGTGGATTACCCACTACATTGAAATCCCTAAGTATCTATAACTCTAAGAAACTAGAGTTTCTACTACGGGAGTTTCTGAAATGCCACCACCCATTCCTTGAACGGCTGAGCATTCATGGTACTTGTAATTCTCTTTCGTCCTTCTCATTCGGCTTTTTCCCAAGGTTGACTCATCTTGAAATCAGTGATCTTGAGCGGCTTGAATCTCTTTCAATTACAATTCCAGAGGCGGGTCTCACGTCTCTTCAGTGGATGTTCATCCGAGGCTGTACTAATCTTGTGTCTATTGGATTGCCAGCCCTTGACTCGTCATGCCCTCTACTTGCCAGCTCTCAACAGTCGGTAGGGCACGCTCTCTCATCTTTGCAGACGTTGACTCTTCATGATTGTCCTGAATTGTTGTTCCCTAGAGAGGGTTTTCCCTCGAACCTACGTTCGCTTGAAATTCACAACTGCAACAAACTGAGTCCCCAGGAGGATTGGGGTTTGCAAAGATACTCCTCTCTTACTCATTTCAGAATCAGTGGTGGATGTGAAGGCTTGGAGACATTTCCAAAGGATTGCCTGCTGCCCTCCAATCTTACCTCTCTCCAAATCTCGCGTCTTCCAGATCTCAAGTCTCTTGACAACAATGGGCTTAAGCACCTTGCTCTTCTTGAAAATTTATGGGTAGACTGGTGCCCCAAGCTTCAATTCTTGGCAGAACAGGGGTTTGAACATCTTACTTCTCTTAAAGAATTAAGGATCAGCGATTGTGCTAGTCTCCAGTCCTTAACACAAGTAGGTCTTCAGCACCTTAACTGTCTTAGAAGATTGTGCATCAGTGGCTGCCATAAGCTCCAATGCTTGACAGAAGAGAGGCTTCCTGCATCCCTCTCTTTTCTAGAAGTAAGATACTGCCCCTTGCTGAAACGTAGGTGCAAATTTAGGGAAGGGCAAGATTGGCACTGTATAAGCCACATTCCATGCATAGTGATTGATGACCAAGCTTTCTAA 3978 0.4216 MAEAVVGGAFLSASLQVLFDRLASREVVNFVRGQRFTPELLKKMEITLLTVYTVLNDAEVKQITNPPVTKWVEELKHVVYEAEDLLDEIATEALRCKMESDSQTSATQVWSIISTSLDSFGEGIESRVEGIIDRLEFLAQQKDVLGLKEGVGEKRSQRWPSASLVDESGVHGRGGSKEEIIEFLLCDNQRGNEACVISIVGMGGLGKTTLSQLVYNDKRLDTHFGLKSWVCVSDEFDLLKIMKAILRQVSPLNSKVKDPNLLQVRLKESLNGKKFLLVLDDVWNENYNNWDLLHTPLKAGFKGSKIIVTTRSEKVALIMRATRIHHLGQLPFEDCWSIFAKHAFGSGDSSLHPKLEAIGKEIVGKCNGSPLAAKILGGILYCKVAEEEWENILNREMWKLPTNEIFSSLRLSYYYLPSHLKRCFAYCSIFPRNYEFQKEKLILLWMAEGFLQEPSSKKREEGVSKLEEVGDKYFNELLSRSFFQKSSNNRSCFVMHDLMNDLAQLVSGEFGIRLENDERHETLEKVRHLSYFRTECDAFGRFEAFNDINCLRTFLSLQIQASGSVSHLSKRVSHDLLPTLRWLRVLSLCDYKIIDLPDSIGNLKHLRYLDLSNCIFLIRLPNSIGTLYNLQTMILSGCFSLIELPVGMGKLINLRHLDITDTKVTKMPADIGQLKSLQTLSTFMVGQGDRSSIGKLRELPYISGKLQIAGLQNVLGFRDALEANLKDKRYLDELLLQWNHSTDGVLQHGTDILNKLQPHTNLKRLSINCFGGTRFPVWLGDLSFFNIVTLHLYKCKHCPFLPPLGQLPSLQVLDIRGMNGVERVGSEFYGNDYLPAKPFTSLETLRFEDLPEWKEWLSFRGEGGEFPRLQEFYIKNCPKLTGDLPIQLPSLIKLEIEGCNQLLVSLPRFPAVRKLKMLKCGNVLSQIQYSGFTSLESLVVSDISQLKELPPGLRWLSINNCESVESPLERMLQSNTHLQYLEIKHCSFSRFLQRGGLPTTLKSLSIYNSKKLEFLLREFLKCHHPFLERLSIHGTCNSLSSFSFGFFPRLTHLEISDLERLESLSITIPEAGLTSLQWMFIRGCTNLVSIGLPALDSSCPLLASSQQSVGHALSSLQTLTLHDCPELLFPREGFPSNLRSLEIHNCNKLSPQEDWGLQRYSSLTHFRISGGCEGLETFPKDCLLPSNLTSLQISRLPDLKSLDNNGLKHLALLENLWVDWCPKLQFLAEQGFEHLTSLKELRISDCASLQSLTQVGLQHLNCLRRLCISGCHKLQCLTEERLPASLSFLEVRYCPLLKRRCKFREGQDWHCISHIPCIVIDDQAF* 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1254 1325 PANTHER DISEASE RESISTANCE PROTEIN RP 69 899 IPR044974 GO:0006952
Vvi12g1254 1325 FunFam Probable disease resistance protein At1g61300 155 323 - -
Vvi12g1254 1325 Gene3D - 155 324 IPR027417 -
Vvi12g1254 1325 PRINTS Disease resistance protein signature 366 380 - -
Vvi12g1254 1325 PRINTS Disease resistance protein signature 269 283 - -
Vvi12g1254 1325 PRINTS Disease resistance protein signature 196 211 - -
Vvi12g1254 1325 PRINTS Disease resistance protein signature 601 617 - -
Vvi12g1254 1325 Gene3D Ribonuclease Inhibitor 544 925 IPR032675 -
Vvi12g1254 1325 Gene3D Ribonuclease Inhibitor 1135 1305 IPR032675 -
Vvi12g1254 1325 Gene3D Ribonuclease Inhibitor 926 1096 IPR032675 -
Vvi12g1254 1325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 427 IPR027417 -
Vvi12g1254 1325 Gene3D - 15 122 - -
Vvi12g1254 1325 Gene3D - 330 412 IPR042197 -
Vvi12g1254 1325 SUPERFAMILY L domain-like 865 1093 - -
Vvi12g1254 1325 Gene3D - 413 505 IPR036388 -
Vvi12g1254 1325 Pfam Rx N-terminal domain 10 103 IPR041118 -
Vvi12g1254 1325 Pfam NB-ARC domain 176 394 IPR002182 GO:0043531
Vvi12g1254 1325 FunFam Probable disease resistance protein At1g63360 413 505 - -
Vvi12g1254 1325 SUPERFAMILY L domain-like 1112 1316 - -
Vvi12g1254 1325 SUPERFAMILY L domain-like 494 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1254 Vvi-Chr12 18226222 18230199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1254 593 680 WRKY Transcription Factor Family AT4G12020 40.909 3.61e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1254 - - vvi:100261714 2670.19