Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1237 ATGGTGTCTGAAACGATGTGGTCTTCAAGAGATCAGGGGGAGAGTGTGATAGTGGTGATGGATGCCAACCGAAGTAAAGCAAGCGTTGATGCAGTGTGCTGGGCTCTCAAGCACGTGGTCCGCCCCAAGGACACTGTTGTTGTTCTTGGTATTCTCTGTGAGCTTGGGAGGAAGACTTCTTGTTTTCCGTTTCACATGGGCATGGGCACCGCTGGGATTTGGGAAAGATTGGAATTGTCAGGAAGTGAAGTGAACCCCAAAGAGCTCGAAGAAGAAATTGAGAAAAAGAGGGAACAATACCAGAGTAGTCTCCAGCCAATATACCGACAATGCAGGAAGAATGAGGTGAAGTTGGAAGTTAAACTTGCTGCAGGATTTGATGCCAAGAAAATAACCATTGAAGAAGCGCAAAACTCAAATACTCGATGGATTGTTTTGGATAGCCACTTGAAGAAGGAGAAGGTGTTCATCTATGGCCAGGTAGACTGCAACATTGCAGTGATGAAAGGAAAAGATGTTGCAACCTTAATGGTACCAAAAGCTTCTGGGTGTTCACAAATTCCCCAAAAAATCACTAGAGTTGACGCGGCAAATATCATCACACCAGATCAACCCCAGACACAGCCAGATGATGAAGACCTAAATGATCTTCAAGAAGACTTATGTCGGCCAGCACCAGCTCCTCAAAGTCCTTGCTGGTATCCCCTTGCATGGAGAACTGGTTTCCCTCGCTCTTTCACTCTCACTGAGCTTGAAGAGATAACAAATAGGTTTGGCGATGAGAATATTGTTTTAGACCACGGGGACATCAAACTTTACGACGGGATCCTGCAGGAAACACCTGTTTTAGTCCAGCGTTTCTCTGGAAATGATCAAGGCAAGTTCTGGTCAGAATTCAAGATCCTCTCCCGTGTCCGCCATCGCAATATCATGAACCTTGTTGGATACTGCTGCACTGGCTCTTGTTTGTTCTTGCTCTTCGACTACCCATGTATGGGTAGCCTTGAAGTGAACCTCCGACGTGAAGATAAGGCTGAGAACCTCTCATGGAGATTAAGGTGGTATATTGCTCAAGAAATAGGAGTAACTTTGCGCTATCTTCATGAGGAATGTGCCGATGGACCCATTGTACACCTGTCTGTTTGCTCCTCTAGTATAGTATTTTCTCACGGTTGCTCTACCATGCTATGCAACTTCTCAACGGCTAAGTTGCTCAAGGATGATACTCCCTTCAATGAAGCTTCACAAGCAGAATGCCCCAAGGTAGAGCAAGACGAGTACCTTTCTGCTGATGTACACGATTATGGGGTGTTCCTCTTGGAGCTCATAGCTGGAAAGAGTGCCAGTGACTTTGAGGCACAAGGCAGTGGACAGTCCTTGATTGATTGGGCACTGCCACTTCTGGAAAATGATTCCCTCGGTGAAGTGATGGATCCCAGAATAGCGGATACTAATGATGTTAGGCTGGTCCATCATATGGCACGAGCTGCACTGTTCTGCCTGAAAAACGATTCCGGTCGGAGGTTATCTATAAGTGAGGTGTTAGCAGTGGTTCGAGGTGATAAAGGGTGGATATCTAAGTACCCACATTGTTGA 1596 0.4618 MVSETMWSSRDQGESVIVVMDANRSKASVDAVCWALKHVVRPKDTVVVLGILCELGRKTSCFPFHMGMGTAGIWERLELSGSEVNPKELEEEIEKKREQYQSSLQPIYRQCRKNEVKLEVKLAAGFDAKKITIEEAQNSNTRWIVLDSHLKKEKVFIYGQVDCNIAVMKGKDVATLMVPKASGCSQIPQKITRVDAANIITPDQPQTQPDDEDLNDLQEDLCRPAPAPQSPCWYPLAWRTGFPRSFTLTELEEITNRFGDENIVLDHGDIKLYDGILQETPVLVQRFSGNDQGKFWSEFKILSRVRHRNIMNLVGYCCTGSCLFLLFDYPCMGSLEVNLRREDKAENLSWRLRWYIAQEIGVTLRYLHEECADGPIVHLSVCSSSIVFSHGCSTMLCNFSTAKLLKDDTPFNEASQAECPKVEQDEYLSADVHDYGVFLLELIAGKSASDFEAQGSGQSLIDWALPLLENDSLGEVMDPRIADTNDVRLVHHMARAALFCLKNDSGRRLSISEVLAVVRGDKGWISKYPHC* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1237 531 Pfam Protein tyrosine and serine/threonine kinase 288 446 IPR001245 GO:0004672|GO:0006468
Vvi12g1237 531 FunFam Dual-specific kinase DSK1-like 7 169 - -
Vvi12g1237 531 Gene3D HUPs 4 165 IPR014729 -
Vvi12g1237 531 Gene3D Transferase(Phosphotransferase) domain 1 332 524 - -
Vvi12g1237 531 PANTHER OS01G0253100 PROTEIN 186 519 - -
Vvi12g1237 531 FunFam Discoidin domain receptor family, member 2, like 236 329 - -
Vvi12g1237 531 SUPERFAMILY Protein kinase-like (PK-like) 239 516 IPR011009 -
Vvi12g1237 531 Gene3D Phosphorylase Kinase; domain 1 237 329 - -
Vvi12g1237 531 ProSiteProfiles Protein kinase domain profile. 234 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1237 Vvi-Chr12 18062460 18066807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1237 246 515 Trihelix Transcription Factor Family AT5G38560 29.965 6.19e-32 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi12g1237 PK_Tyr_Ser-Thr 4.2e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1237 - - vvi:104881004 798.89