Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1228 ATGGCTGGGGCTATAGTAGGAGGAGCACTTCTCTCGGCTTCTATCGAAGTTCTACTTCACCGGATGGCTTCTCGCGAGGTCCTCACCTTCCTCCGGCGACAGAGACTCAGTGCTACGCTCCTAAGGAAGTTGAGGATAAAATTGCTGGCAGTTCAGGTAGTGCTCGACGACGCTGAGGCCAAGCAATTCACAAAATCAGCTGTAAAAGATTGGCTGGATGACCTGAAAGATGCTGTGTATGATGCAGAGGACCTGTTGGATGATATCACCACTGAAACTCTACGCTGCAAAATGGAGTCTGATGCTCAAACCAGCGCAACTCAGGTACGTGACATCACCTCTGCCTCGCTTAATCCGTTTGGAGGGGGGATCGAGTCCAGGGTAGAGGAGATCACTGACAAACTAGAATATCTTGCACAAGAAAAAGATGTTCTGGGATTGAAAGAAGGCGTTGGAGAAAAATTGTCACAAAGATGGCCCGCGACTTCCTTGGTAGATGAGTCTGGGGAGGTGTACGGAAGGGAAGGTAATATAAAGGAGATAATTGAATATTTGTTGTCCCATAATGCAAGTGGGAATAAGATAAGTGTGATCGCCCTGGTGGGTATGGGCGGTATTGGAAAGACCACACTTGCTCAATTGGTGTATAATGATAGGAGAGTGGTGGAATGTTTTGATCTTAAAGCTTGGGTTTGTGTTTCCGATGAATTTGATCTTGTCAGGATAACGAAAACCATTCTTAAGGAAATCGATTCTGGGGCTTCTGAAAAATATTCTGATGATAGTGATTTGAATCTGCTTCAACTTAAAGTGAAGGAGAGACTTAGTAAGAAGAAATTCTTACTTGTCCTTGATGATGTTTGGAATGAAAACTATACTAATTGGCATATGCTACAAACTCCATTCACCGTTGGTCTAAATGGAAGTAAGATTATTGTAACTACACGTAGTGATAAGGTTGCATCGATCATGCGTTCAGTTCATATTCATCATTTGGGACAGTTATCCTTTGAGGACTGCTGGTCGCTATTTGCAAAACATGCATTTGAAAATGGAGATTCTAGTCTACATCCAGAACTAGAAGAAATTGGCAAAGGGATTGTAAAGAAGTGTAAAGGATTGCCTTTGGCTGCAAAGACCCTAGGGGGTGCCTTATACTCAGAGTTACGAGTAAAAGAATGGGAATTTGTATTGAACAGCGAAACGTGGGATTTACCAAATGATGAAATTCTCCCCGCCTTAAGGTTAAGCTATTCTTTTCTTCCTTCACACTTAAAGCGGTGTTTTGCATATTGCTCAATTTTTCCTAAGGACTACGAATTTGAAAAGGAAAATTTGATTCTATTGTGGATGGCAGAAGGCTTTTTGCAACAATTTGAAAGCAAGAAAACAATGGAAGAGGTGGGTGATGGGCATAGCAAAGTGAAAGAGATGCCAAGTCACATGGGTCAATTAAAAAGTTTACAAAAATTGAGTAACTATATAGTGGGCAAGCAAAGTGGGACAAGGGTTGGAGAGTTGAGGAAGCTTTCCCACATTGGTGGGAGTCTTGTCATTCAAGAGCTGCAGAATGTGGTTGATGCTAAGGATGCCTCAGAGGCCAATTTGGTAGGCAAGAAATATCTGGATGAGTTACAGTTGGAATGGAATCGTGGAAGTCATTTTGAACAAAATGGAGCAGACATAGTGCTCAACAACTTACAACCTCATTCAAACTTAAAGAGACTTACTATTTATAGTTATGGTGGCTCAAGATTTCCAGATTGGTTAGGTCCTTCAATTCTGAATGTGGTGTCGCTACGTCTCTGGAATTGTAAGAATGTGTCAACCTTCCCACCGCTTGGGCAGCTACCCTCTCTTAAACATTTATATATATTGGGGTTGAGGGAGATAGAAAGGGTGGGCGTTGAGTTTTATGGCACTGATCCCTCCTTTGTATCCCTAAAGGCTCTATCATTTGAGGGTATGCCAAAATGGAAGGAATGGTTGTGCATGGGAGGCCAAGGTGGAGAATTCCCTCGTCTCAAGGAGCTTTATATAGAGGATTGTCCCAAGCTAATTGGGGACTTACCAACCGATCTGCTTTTCTTGACCACACTACGGATTGAAAAATGTGAGCAGCTTTTTCTCCTACCTGAGTTCTTAAAATGTCACCACCCTTCCCTTGCCTATTTGTCTATATTCAGTGGTACTTGCAATTCTCTCTCATCCTTCCCACTCGGCAACTTCCCAAGTTTGACTCACCTCATTATCAGCGATCTCAAGGGGCTTGAATCCCTCTCCATTTCAATTTCAGAGGGCGATATGCTTGGAGAAGAGAGAAGTCAAACCATATTCAAAGTCATAGCAGTGCAGAGTATGGTTTTGTTCCACCAAGTTCAGTACTTGGAGGATGGCTACTCAACTAAACCCTATTTATTGGAGCACAATTTGAGCTTTTCTTCCTTACTCAGATGGTGGCACTTTGAATCTTTGGAACAGTTGTAG 2487 0.4258 MAGAIVGGALLSASIEVLLHRMASREVLTFLRRQRLSATLLRKLRIKLLAVQVVLDDAEAKQFTKSAVKDWLDDLKDAVYDAEDLLDDITTETLRCKMESDAQTSATQVRDITSASLNPFGGGIESRVEEITDKLEYLAQEKDVLGLKEGVGEKLSQRWPATSLVDESGEVYGREGNIKEIIEYLLSHNASGNKISVIALVGMGGIGKTTLAQLVYNDRRVVECFDLKAWVCVSDEFDLVRITKTILKEIDSGASEKYSDDSDLNLLQLKVKERLSKKKFLLVLDDVWNENYTNWHMLQTPFTVGLNGSKIIVTTRSDKVASIMRSVHIHHLGQLSFEDCWSLFAKHAFENGDSSLHPELEEIGKGIVKKCKGLPLAAKTLGGALYSELRVKEWEFVLNSETWDLPNDEILPALRLSYSFLPSHLKRCFAYCSIFPKDYEFEKENLILLWMAEGFLQQFESKKTMEEVGDGHSKVKEMPSHMGQLKSLQKLSNYIVGKQSGTRVGELRKLSHIGGSLVIQELQNVVDAKDASEANLVGKKYLDELQLEWNRGSHFEQNGADIVLNNLQPHSNLKRLTIYSYGGSRFPDWLGPSILNVVSLRLWNCKNVSTFPPLGQLPSLKHLYILGLREIERVGVEFYGTDPSFVSLKALSFEGMPKWKEWLCMGGQGGEFPRLKELYIEDCPKLIGDLPTDLLFLTTLRIEKCEQLFLLPEFLKCHHPSLAYLSIFSGTCNSLSSFPLGNFPSLTHLIISDLKGLESLSISISEGDMLGEERSQTIFKVIAVQSMVLFHQVQYLEDGYSTKPYLLEHNLSFSSLLRWWHFESLEQL* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1228 828 Gene3D Ribonuclease Inhibitor 472 696 IPR032675 -
Vvi12g1228 828 Coils Coil 41 61 - -
Vvi12g1228 828 Coils Coil 72 92 - -
Vvi12g1228 828 FunFam Probable disease resistance protein At1g61300 156 328 - -
Vvi12g1228 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 432 IPR027417 -
Vvi12g1228 828 Gene3D - 21 118 - -
Vvi12g1228 828 PRINTS Disease resistance protein signature 197 212 - -
Vvi12g1228 828 PRINTS Disease resistance protein signature 670 686 - -
Vvi12g1228 828 PRINTS Disease resistance protein signature 274 288 - -
Vvi12g1228 828 PRINTS Disease resistance protein signature 371 385 - -
Vvi12g1228 828 Gene3D - 154 329 IPR027417 -
Vvi12g1228 828 PANTHER DISEASE RESISTANCE PROTEIN RP 478 706 IPR044974 GO:0006952
Vvi12g1228 828 Pfam NB-ARC domain 175 399 IPR002182 GO:0043531
Vvi12g1228 828 Gene3D - 334 416 IPR042197 -
Vvi12g1228 828 Pfam Rx N-terminal domain 11 101 IPR041118 -
Vvi12g1228 828 Gene3D - 417 471 IPR036388 -
Vvi12g1228 828 SUPERFAMILY L domain-like 472 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1228 Vvi-Chr12 17879196 17885995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1228 195 454 WRKY Transcription Factor Family AT5G45050 26.493 5.88e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1228 - - vvi:100254853 934.095