Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1217 ATGGCTTCTCGCGAGGTCCGCACCTTCCTCCCGCGACAGAGACTCAGTGCTACGCTCCTAAGGAAGTTGAGGATAAAATTGCTGGCAGTTCAGGTAGTGCTCGACGACGCTGAGGCCAAGCAATTCACAAAATCAGCTGTAAAAGATTGGCTGGATGACCTGAAAGATGCTGTGTATGATGCAGAGGACCTGTTGGATGATATCACCACTGAAGCTCTACGCTGCAAAATGGAGTCTGATGCTCAAACCAGCGCAACTCAGGTACGTGACATCACCTCTGCCTCGCTTAATCCGTTTGGTGAGGGGATCGAGTCCAGGGTAGAGGAGATCACTGACAAACTAGAATATCTTGCACAAGAAAAAGATGTTCTGGGATTGAAAGAAGGCGTTGGAGAAAAATTGTCACAAAGATGGCCCGCGACTTCCTTGGTAGATGAGTCTGGGGAGGTGTACGGAAGGGAAGGTAATATACAGGAGATAGTTGAATATTTGTTGTCCCATAATGCAAGTGGGAATAAGATAAGTGTGATCGCCCTGGTGGGTATGGGCGGTATTGGAAAGACCACACTTGCTAAGCTGGTGTATAATGATAGGAGAGTGGTGGAATGTTTTGACCTTAAAGCTTGGGTTTGTGTTTCCGATGAATTTGATCCTGTCAGGATAACGAAAACCATTCTTAAGGCAATCGATTCTGGGGCTTCTGAAAAATATTCTGATGATAGTGATTTGAATCTGCTTCAACTTAAAGTGAAGGAGAGACTTAGTAAGAAGAAATTCTTACTTGTCCTTGATGATGTTTGGAATGAAAACTATAATAATTGGGATATGCTACAAACTCCATTCACCGTTGGTCTAAATGGAAGTAAGATTATAGTAACTACACGTAGTGATAAGGTTGCATCGGTCATGCGTTCAGTTCATATTCATCATTTGGGACAGTTATCCTTTGAGGACTGCTGGTCGCTATTTGCAAAACATGCATTTGAAAATGGAGATTCTAGTCTACATCCAGAACTTGAAGAAATTGGCAAAGGGATTGTAAAGAAGTGTAAAGGATTGCCTTTGGCTGCAAAGACCCTAGGGGGTGCCTTATACTCAGAGTTACGAGTAAAAGAATGGGAATTTGTGTTGAACAGCGAAACGTGGGATTTACCGAATGATGAAATTCTCCCTGCCTTAAGGTTAAGCTATTCTTTTCTTCCTTCACATTTAAAGCGATGTTTTGCATATTGCTCAATTTTTCCTAAGGACTACGAATTTGAAAAGGAAATTTTGATTCTATTGTGGATGGCTGAAGGCTTTTTGCAACAATTTGAAAACAAGAAAACAATGGAAGAAGTGGGTGATGGGTACTTTTATGACCTATTATCAAGGTCATTTTTTCAGAAGTCCAATAGTCACAAATCATATTTTGTAATGCATGATCTCATTCACGACTTGGCTCAACTTGTTTCTGGAAAATTTTGTGTTCAATTGAAGGATGGTAAGATGAATGAAATTCTTGAAAAGCTCCGCCATTTATCATATTTTAGAAGTGAATATGACCCGTTTGAGAGATTTGAGACCCTAAATGAAGTTAATGGTCTTCGTACCTTCTTTCCTTTGAATTTGATAACTTGGCCTCGATTTGACAAGGTTTCAAATAATAGAAATCCAAATGCTGTTAGGTATGTTGTAGATTTTCGGTTGAGTAATAGAGTTTGGACCGATTTATTATTGAAAGTTCAATATTTACGAGTATTATCATTATGCTACTATAAGATAACGGATTTGTCTGATTCAATTGGTAATTTGAAACATTTGCGCTATTTGGACCTTACCTACACACTCATCAAAAGGTTACCAGAGTCGATTTGTAGTTTGTATAATTTACAAACATTGATATTATACGAGTGTAGATGTCTTGTTGAATTGCCTAAAATGATGTGGAAAATGATTAGCTTACGTCATCTTGATATCAGGCATAGCAAAGTGAAAGAGATGCCAAGTCACATGGGTCAATTAAAAAGTCTACAAAAATTGAGTAACTATATAATGGGTGAGCAAAGTGGGACAAGGGTTGGAGAGTTGAAGAAGCTTTCGCGCATTGGTGGAAGTCTTGTCATTCAAGAGCTGCAGAATGTGGTTGATGCTAAGGATGCCTCAGAGGCCAATTTGGTAGGCAAGCAATATCTGGATGAGTTACAGTTGGAATGGAATCGTGGTAGTGATGTTGAACAAAATGGAGCAGAGATAGTGCTGAACAACTTACAACCTCATTCAAACTTAAAGAGACTCACTATTTACGGTTATGGTGGTTCAAGATTTCCAGATTGGTTAGGTCCTTCAGTTCTGAATATGGTGTCGCTACGTCTCTGGTATTGTACGAATATGTCAACCTTCCCACCGCTGGGGCAGCTACCCTCTCTTAAACATTTATATATATCGGGGTTGGAGGAGATAGAAAGGGTGGGCGCAGAGTTTTATGGGACTGAGCCCTCCTTTGTCTCCCTAGAAGCTCTATCATTTCGGGGTATGCGAAAATGGAAGGAATGGTTGTGTTTGGGAGGCCAAGGTGGAGAATTCTCTCGTCTCAAGGAGCTTTATATAGAGAGGTGTCCCAAGCTAATCGGAGCCTTACCAAATCATCTGCCTTTGTTGACGAAACTAGAGATTGTACAATGTGAGCAGCTTGTGGCTGAACTTCCAAGGATTCCAGCCATCCGTGTATTGACGACACGCAGCTGTGACATCTCACAGTGGAAGGAACTACCACCACTACTGCAGGATCTCTCAATTCAAAATTCCGACTCTTTGGAGTCCCTATGGGAGGAGGGAATGTTGCAAAGTAATACTTGTCTTCGACAGTTGAGAATCAGAAATTGCTCTTTTTCGAGACCCTTGTGCAGAGTTTGTTTGCCCATTACATTGAATTCGTTATATATAAACGATTCTAAGAAACTAGAGTTTCTCCTACCTGAGTTTTTAAAATGTCACCACCCTTCCCTTGACTATTTGTCTATCGTCAGAAGTAATTGCAATTCTCTCTCATCCTTCCCACTCGGCAACTTCCCAAGTTTAACTGAGCTCGCTATCTGCAAACTCAGGGGGATTGAATCCCTCTCCATTTCAATTTCAGAGGGCGATGTTACATCTTTTCATTGGTTGAACATCAGAAGTTGCCCTGATCTTGTGTCTATTGAATTGTCAGCTCTCGACTTCTCACGATATTCCATCTTCAAGTGCAAGAATCTCAAGCGGCTGCTGCACAACGCTGCATGCTTTCAGTCATTAACAATAGAAGGTTGTCCTGAATTGATATTCCCAATACAAGGTCTGCAAGGACTGTCCTCTCTTACCTCTCTCAAAATCTCAGATCTTCCAAATCTCATGTCCCTTGACAGTTTGGAGCTTCAACTGCTCACCTCACTTGAAAAATTAGAGATCTGTGGCTGCCCCAAGCTCCAATTCTTGACAGAAGGGCAGCTGCCCACCAACCTTTCTGTTCTAACAATTCAGAACTGCCCATTTCTGAAAGATCGGTGCAAGTTTTGGACAGGGGAAGATTGGCATCATATAGCTCACATTCCACACATTGCGATCGATGACCAAGTTTTGTAA 3600 0.4128 MASREVRTFLPRQRLSATLLRKLRIKLLAVQVVLDDAEAKQFTKSAVKDWLDDLKDAVYDAEDLLDDITTEALRCKMESDAQTSATQVRDITSASLNPFGEGIESRVEEITDKLEYLAQEKDVLGLKEGVGEKLSQRWPATSLVDESGEVYGREGNIQEIVEYLLSHNASGNKISVIALVGMGGIGKTTLAKLVYNDRRVVECFDLKAWVCVSDEFDPVRITKTILKAIDSGASEKYSDDSDLNLLQLKVKERLSKKKFLLVLDDVWNENYNNWDMLQTPFTVGLNGSKIIVTTRSDKVASVMRSVHIHHLGQLSFEDCWSLFAKHAFENGDSSLHPELEEIGKGIVKKCKGLPLAAKTLGGALYSELRVKEWEFVLNSETWDLPNDEILPALRLSYSFLPSHLKRCFAYCSIFPKDYEFEKEILILLWMAEGFLQQFENKKTMEEVGDGYFYDLLSRSFFQKSNSHKSYFVMHDLIHDLAQLVSGKFCVQLKDGKMNEILEKLRHLSYFRSEYDPFERFETLNEVNGLRTFFPLNLITWPRFDKVSNNRNPNAVRYVVDFRLSNRVWTDLLLKVQYLRVLSLCYYKITDLSDSIGNLKHLRYLDLTYTLIKRLPESICSLYNLQTLILYECRCLVELPKMMWKMISLRHLDIRHSKVKEMPSHMGQLKSLQKLSNYIMGEQSGTRVGELKKLSRIGGSLVIQELQNVVDAKDASEANLVGKQYLDELQLEWNRGSDVEQNGAEIVLNNLQPHSNLKRLTIYGYGGSRFPDWLGPSVLNMVSLRLWYCTNMSTFPPLGQLPSLKHLYISGLEEIERVGAEFYGTEPSFVSLEALSFRGMRKWKEWLCLGGQGGEFSRLKELYIERCPKLIGALPNHLPLLTKLEIVQCEQLVAELPRIPAIRVLTTRSCDISQWKELPPLLQDLSIQNSDSLESLWEEGMLQSNTCLRQLRIRNCSFSRPLCRVCLPITLNSLYINDSKKLEFLLPEFLKCHHPSLDYLSIVRSNCNSLSSFPLGNFPSLTELAICKLRGIESLSISISEGDVTSFHWLNIRSCPDLVSIELSALDFSRYSIFKCKNLKRLLHNAACFQSLTIEGCPELIFPIQGLQGLSSLTSLKISDLPNLMSLDSLELQLLTSLEKLEICGCPKLQFLTEGQLPTNLSVLTIQNCPFLKDRCKFWTGEDWHHIAHIPHIAIDDQVL* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1217 1199 PANTHER DISEASE RESISTANCE PROTEIN RP 22 889 IPR044974 GO:0006952
Vvi12g1217 1199 SUPERFAMILY L domain-like 470 958 - -
Vvi12g1217 1199 PRINTS Disease resistance protein signature 350 364 - -
Vvi12g1217 1199 PRINTS Disease resistance protein signature 253 267 - -
Vvi12g1217 1199 PRINTS Disease resistance protein signature 176 191 - -
Vvi12g1217 1199 PRINTS Disease resistance protein signature 875 891 - -
Vvi12g1217 1199 Pfam Rx N-terminal domain 19 81 IPR041118 -
Vvi12g1217 1199 Gene3D - 15 98 - -
Vvi12g1217 1199 Gene3D - 396 483 IPR036388 -
Vvi12g1217 1199 Gene3D - 313 395 IPR042197 -
Vvi12g1217 1199 SUPERFAMILY L domain-like 899 1187 - -
Vvi12g1217 1199 Coils Coil 20 40 - -
Vvi12g1217 1199 Gene3D - 133 308 IPR027417 -
Vvi12g1217 1199 Gene3D Ribonuclease Inhibitor 897 1188 IPR032675 -
Vvi12g1217 1199 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 411 IPR027417 -
Vvi12g1217 1199 Gene3D Ribonuclease Inhibitor 546 704 IPR032675 -
Vvi12g1217 1199 Gene3D Ribonuclease Inhibitor 705 896 IPR032675 -
Vvi12g1217 1199 FunFam Probable disease resistance protein At1g63360 397 483 - -
Vvi12g1217 1199 Coils Coil 51 71 - -
Vvi12g1217 1199 FunFam Probable disease resistance protein At1g61300 135 307 - -
Vvi12g1217 1199 Pfam Leucine rich repeat 577 629 IPR001611 GO:0005515
Vvi12g1217 1199 Pfam NB-ARC domain 154 378 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1217 Vvi-Chr12 17721028 17724627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1217 174 414 WRKY Transcription Factor Family AT5G45050 26.275 3.17e-08 56.2