Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1205 ATGGCCGGGGCTGTAGCAGGAGGAGGAGCACTTCTCTCGGCTTCTCTCAAAGTTCTACTTAATCGGATGGATTCTCCCGAGGTCCGCACCTTCCTCCGAGGACAGAAACTCAGTGCTACGCTCCGAAGGGAGTTGAAGATGAAATTGCTGGCAGTTAAGGCAGTGCTGAATGACGCCGAGGCCAAGCAAATCACGAATTCAGATGTCAAAGATTGGATGGATGAGCTGAAAGATGCTGTGTATGATGCGGAGGACCTGGTGGATGATATCACCACTGAAGCTTTACGATGCAAGATGGAGTCTGATTCTCAATCTCAGGTACGGAACATCATCTTTGGTGAGGGGATCGAGTCCAGGGTAGAGGGGATCACTGACACACTAGAATATCTTGCACAAAAAAAAGATGTTCTCGGGTTGAAAGAAGGCGTTGGAGAAAATTTGTCAAAAAGATGGCCGACGACTTCCTTGGTAGATGAGTCTGGGGTGTACGGTAGGGATGCTGATAAAGAGAAGATAGTTGAGTCTTTGTTGTTCCATAACGCAAGTGGGAATAAGATAGGTGTGATCGCCTTGGTGGGTATGGGCGGTATTGGAAAGACCACCCTTACCCAGCTGGTCTATAATGATAGGAGAGTGGTGGAATATTTTGATCTTAAAGCATGGGTTTGTGTTTCAGATGAATTTGATCTTGTCAGGATAACGAAAACCATTCTTATGGCATTCGATTCTGGGACTTCTGGAAAATCGCCTGATGACGATGATTTGAATCTGCTTCAACTTAAATTGAAGGAGAGACTTAGCAGGAAGAAATTCTTACTTGTCCTTGACGATGTTTGGAATGAAGACTATAATATTTGGGATTTGCTGCGAACTCCATTCAGTGTTGGTCTAAATGGAAGTAAGATTATTGTAACCACACGAATCAAGAAGGTTGCTGCAGTCATGCATTCAGCTCCTATTCATCCTTTAGGACAGTTATCCTTTGAAGATTGTTGGTCCCTATTTGCAAAACATGCATTTGAAAATGGAGATTCTAGTTCACATCCAAAGCTAGAAGAAATTGGCAAGGAGATTGTAAAAAAGTGTGATGGATTGCCTTTAGCTGCAAAAACCCTTGGAGGTGCCTTATATTCAGAGGTTCGAGTAAAAGAATGGGAAAATGTATTGAACAGTGAAATGTGGGATTTACCAAATAATGCGATTCTTCCTGCCTTATTCTTGAGCTACTATTATCTTCCTTCACATCTAAAACGATGTTTTGCATATTGTTCTATTTTTCCTCAAGACTACCAATTTGACAAGGAAAACTTGATTTTACTGTGGATGGCAGAAGGGTTTTTGCAACAATCAAAAAAAGGTAAGAAAACAATGGAAGAGGTAGGTGATGGGTACTTTTATGACCTATTATCAAGGTCATTTTTTCAAAAGTTTGGTAGCCACAAATCATATTTTGTAATGCATGATCTCATTAGCGACTTGGCTCGATTTGTTTCTGGAAAAGTTTGTGTTCATTTGAATGATGATAAGATAAATGAAATTCCTGAAAAGCTTCGTCACTTATCAAATTTTAGAGGCGGATATGACTCCTTTGAGAGATTTGACACCCTTAGTGAAGTTCATTGTCTTCGGACCTTCTTGCCATTGGATTTGAGGACTCGGCATCGGTTTGACAAGGTTTCAAAGTCAAGAAATCCAGTTAAGAGTGGAAGGTATGGTGGAGTGTTTTACTTGAGTAATAGAGTTTGGAATGATTTATTATTGAAAGGTCAATATTTACGAGTGTTATCGTTGTGTTATTATGAGATAACGGATTTGCCGGATTCAATTGGTAATTTAACACATTTACGCTATTTGGACCTTACCTACACACCCATCAAAAGATTACCTGAATCTGTTTGTAATTTGTATAATTTACAGACATTGATATTATATTATTGTGAGCGTCTTGTTGGATTGCCTGAAATGATGTGCAAAATGATTAGCTTACGTCATCTTGATATCAGGCATAGCAGAGTGAAAGAGATGCCAAGTCAAATGGGTCAATTAAAAATTTTAGAAAAATTGAGTAACTATAGAGTAGGCAAGCAAAGCGGGACGAGGGTTGGAGAGTTGAGGGAGCTTTCCCACATTGGTGGGAGTCTTGTCATTCAAGAGCTGCAGAATGTGGTTGATGCTAAGGATGCCTCAGAGGCCAATTTGGTAGGCAAGCAGCGTTTGGATGAGTTAGAGCTGGAATGGAATCGTGATAGTGATGTTGAACAAAATGGAGCATACATAGTCCTCAACAACTTACAACCTCATTCAAATTTAAGGAGACTCACTATTCATAGATATGGTGGTTCAAAATTTCCAGACTGGTTAGGAGGTCCTTCAATTCTGAATATGGTGTCGCTACGTCTCTGGAATTGTAAGAATGTGTCAACCTTCCCACCGCTTGGGCAGCTACCCTCCCTTAAACATTTATATATATTGGGGTTGGGGGAGATAGAAAGAGTGGGCGCTGAGTTTTATGGGACTGAGCCCTCCTTTGTATCCTTAAAAGCTCTATCATTTCAGGATATGCCAGTATGGAAGGAATGGTTGTGTTTGGGAGGCCAAGGTGGAGAATTCCCTCGTCTCAAGGAGCTTTATATAAAGAATTGTCCCAAGCTAACTGGGGACTTACCAAACCATCTGCCTTTATTGACGAAACTAGAGATTGAAGAATGTGAGCAGCTTGTGGCTCCACTTCCAAGGGTTCCAGCCATCCGTGTATTGACGACGCGCAGCTGTGACATCTCACAGTGGAAGGAACTGCCACCACTATTGCGGAGTCTCTCAATTACAAATTCCGACTCTGCGGAGTCTCTACTGGAGGAGGGAATGTTGCAAAGCAACGCTTGTCTTGAAGATTTGAGCATCATAAACTGTTCTTTTTCCAGACCCCTGTGCAGAATTTGTTTACCCATTGAATTGAAATCATTGGCCATCTATGAGTGTAAGAAACTAGAGTTTCTCCTACCTGAGTTCTTCAAATGTCACCACCCTTCCATTAAACATTTGGAAATCTTAGGTGGCACTTGCAATTCTCTCTCATTCAATATCCCACACGGCAAGTTCCCAAGGTTGGCTAGGATTCAAATCTGGGGTCTCGAGGGGCTTGAATCCCTCTCCATTTCAATTTCGGGCGGGGATCTTACAACTTTTGCTTCGTTGAACATCGGAAGGTGCCCTAATCTTGTGTCTATTGAATTGCCAGCTCTCAACATCTCACGATATTCAATCTTCAATTGCGAGAATCTCAAGTCGCTGCTGCACAACGCTGCATGCTTTCAATCATTAGTGTTAGAAGATTGTCCGGAATTGATATTCCCAATACAGGGTCTTCCCTCCAACCTAACTTCACTATTTATTAGAAACTGCGACAAACTCACATCCCAGGTGGAGTGGGGTCTGCAAGGACTGCCCTCTCTTACCTCTCTCACAATCTCAGGTCTTCCAAATCTCATGTCCCTGGACGGTATGGGGCTTCAACTGCTCACCTCTCTTCGAAAATTACAGATCTGTGACGGCCCCAAGCTCCAATCTTTGACAGAAGAGCGGCTACCCAGCTCCCTTTCTTTTCTAACAATCCGCGACTGTCCATTGCTGAAAGATCGGTGCAAGTTTTGGACAGGGGAAGATTGGCATCTTATAGCTCACATTCCACACATTGTGATCGATGACCAAGTTTTGTAA 3717 0.4224 MAGAVAGGGALLSASLKVLLNRMDSPEVRTFLRGQKLSATLRRELKMKLLAVKAVLNDAEAKQITNSDVKDWMDELKDAVYDAEDLVDDITTEALRCKMESDSQSQVRNIIFGEGIESRVEGITDTLEYLAQKKDVLGLKEGVGENLSKRWPTTSLVDESGVYGRDADKEKIVESLLFHNASGNKIGVIALVGMGGIGKTTLTQLVYNDRRVVEYFDLKAWVCVSDEFDLVRITKTILMAFDSGTSGKSPDDDDLNLLQLKLKERLSRKKFLLVLDDVWNEDYNIWDLLRTPFSVGLNGSKIIVTTRIKKVAAVMHSAPIHPLGQLSFEDCWSLFAKHAFENGDSSSHPKLEEIGKEIVKKCDGLPLAAKTLGGALYSEVRVKEWENVLNSEMWDLPNNAILPALFLSYYYLPSHLKRCFAYCSIFPQDYQFDKENLILLWMAEGFLQQSKKGKKTMEEVGDGYFYDLLSRSFFQKFGSHKSYFVMHDLISDLARFVSGKVCVHLNDDKINEIPEKLRHLSNFRGGYDSFERFDTLSEVHCLRTFLPLDLRTRHRFDKVSKSRNPVKSGRYGGVFYLSNRVWNDLLLKGQYLRVLSLCYYEITDLPDSIGNLTHLRYLDLTYTPIKRLPESVCNLYNLQTLILYYCERLVGLPEMMCKMISLRHLDIRHSRVKEMPSQMGQLKILEKLSNYRVGKQSGTRVGELRELSHIGGSLVIQELQNVVDAKDASEANLVGKQRLDELELEWNRDSDVEQNGAYIVLNNLQPHSNLRRLTIHRYGGSKFPDWLGGPSILNMVSLRLWNCKNVSTFPPLGQLPSLKHLYILGLGEIERVGAEFYGTEPSFVSLKALSFQDMPVWKEWLCLGGQGGEFPRLKELYIKNCPKLTGDLPNHLPLLTKLEIEECEQLVAPLPRVPAIRVLTTRSCDISQWKELPPLLRSLSITNSDSAESLLEEGMLQSNACLEDLSIINCSFSRPLCRICLPIELKSLAIYECKKLEFLLPEFFKCHHPSIKHLEILGGTCNSLSFNIPHGKFPRLARIQIWGLEGLESLSISISGGDLTTFASLNIGRCPNLVSIELPALNISRYSIFNCENLKSLLHNAACFQSLVLEDCPELIFPIQGLPSNLTSLFIRNCDKLTSQVEWGLQGLPSLTSLTISGLPNLMSLDGMGLQLLTSLRKLQICDGPKLQSLTEERLPSSLSFLTIRDCPLLKDRCKFWTGEDWHLIAHIPHIVIDDQVL* 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1205 1238 Pfam NB-ARC domain 167 390 IPR002182 GO:0043531
Vvi12g1205 1238 SUPERFAMILY L domain-like 485 900 - -
Vvi12g1205 1238 Gene3D - 325 407 IPR042197 -
Vvi12g1205 1238 FunFam Probable disease resistance protein At1g63360 409 496 - -
Vvi12g1205 1238 Gene3D Ribonuclease Inhibitor 725 913 IPR032675 -
Vvi12g1205 1238 Gene3D Ribonuclease Inhibitor 1084 1216 IPR032675 -
Vvi12g1205 1238 Gene3D Ribonuclease Inhibitor 492 709 IPR032675 -
Vvi12g1205 1238 Gene3D Ribonuclease Inhibitor 914 1083 IPR032675 -
Vvi12g1205 1238 Gene3D - 36 123 - -
Vvi12g1205 1238 Gene3D - 146 319 IPR027417 -
Vvi12g1205 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 423 IPR027417 -
Vvi12g1205 1238 Gene3D - 408 491 IPR036388 -
Vvi12g1205 1238 PRINTS Disease resistance protein signature 265 279 - -
Vvi12g1205 1238 PRINTS Disease resistance protein signature 362 376 - -
Vvi12g1205 1238 PRINTS Disease resistance protein signature 188 203 - -
Vvi12g1205 1238 PRINTS Disease resistance protein signature 890 906 - -
Vvi12g1205 1238 PANTHER DISEASE RESISTANCE PROTEIN RP 44 904 IPR044974 GO:0006952
Vvi12g1205 1238 FunFam Probable disease resistance protein At1g61300 149 319 - -
Vvi12g1205 1238 Pfam Rx N-terminal domain 12 105 IPR041118 -
Vvi12g1205 1238 SUPERFAMILY L domain-like 913 1223 - -
Vvi12g1205 1238 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1205 Vvi-Chr12 17531014 17534730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1205 161 682 WRKY Transcription Factor Family AT5G45050 23.230 5.22e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1205 - - vvi:100244577 2429.44