Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1203 ATGCTACATTTTTTAGGATGGTTGTTTCCTTCTTTTAACTTCCTTTTTTATGATTCACATGTCAAAGAGTGGGTGGATGAGCTTAAAGATGCTGTCTATGATGCAGAGGACCTGCTGGACGAGATTGCTAACCAAGATCTACAGAGAAAGATGGAGACCGACCCTCAAACTAGTGCACATCAGGTGTGGAATATCTTCTCTAACTCGCTTAATCCATTTGCTGATGGGGTGGAGTCCAGGGTAGAGGAGATCATTGATAGACTAGAATTTCTTGCACAAAAAAAAGATGTTCTCGGGTTGAAACAAGGTGTGGGGGAGAAACTGTTCCAAAGATGGCCTTCGACTTCTGTGGTGGATGAATCTGGTGTCTATGGTAGAGATGACAACAAAGAGGAGATAATCAAAATGTTGGTGTCAGATAATTCAAGCGGCAATGAGATAGGTGTGATATCCATTGTAGGCATGGGTGGTATTGGCAAGACCACTCTTACTCAGCTTGTATATAACGATGAGAGTGTGAAAAAATATTTTGACTTGGAAGCATGGGTTTGTGTTTCAGAAGAATTTGATCTTCTGAGGATAACAAAAACAATTTTTGAAGCAACCACTTCACGGGGTTTTACTTCTGATGTGAATGACTTAAATTTTCTTCAAGTGAAACTGAAGGAGAGCCTTAATGGAAAGAAATTTCTTCTTGTTTTGGATGATGTTTGGAACGAGAATTACAATAATTGGGACAGGCTAAGAACTCCGCTCAAAGTTGGGTCAAACGGAAGTAAGATTATTGTAACAACGCGTAGTGAAAATGTTGCATTAGTCATGCGCTCTGTTCACACTCATCGTCTGGGACAACTATCATTTGAAGATTGCTGGTGGTTATTTGCAAAACATGCATTTGAAAATGGAGATCCTAGTGCACATCCATACTTAGAAGCAATTGGCAAAGAGATTGTGAAGAAGTGTCAAGGTTTGCCTTTAGCTGCAAAAACACTTGGGGGTCTTTTACACTTTAAGGTACAAGCAGATGAATGGGATAATATCTTGAGGAGCGAAATGTGGGATTTGCCAAGCAATGAAATTCTTCCAGCTTTGAGGTTAAGCTACTATCATCTCCCTTCACATCTAAAGCAATGTTTTGCTTATTGCTCAATTTTTCCCAAGGACTATCAGTTCCAAAAGGAGAGGCTGGTTTTATTATGGATGGCAGAAGGCTTTTTGCAACAACCAAAAAGCAAGAAACGAATGGAAGAGGTAGGTGACCAATACTTTCATGAACTATTATCAAGGTCCTTTTTTCAAAAATCAAGTAGTAGAAACTCATGTTTTGTAATGCATGACCTTGTCAATGACTTGGCTCAACTTGTGTCGGGAGAATTTTGTATTCAGTTAGGGGATGGTTGGGGGCATGAAACATATGAAAAGGTTTGCCACTTGTCGTATTATAGAAGTGAATATGATGCCTTTGAGAGATTTGCGAATTTCATCGAAGTTAAGCGTCTTCGGACTCTTTTCACATTGCAATTGCAATTTTTGCCGCAGTCCTACTTGAGTAACAGGATTTTGGACAAGCTATTACCAAAATTTAGATGCTTACGGGTGTTGTCTTTGTTCAATTACAAGACTATAAATTTGCCTGATTCAATTGGCAATTTGAAGCATTTACGTTACCTGAACGTCTCGCATTCAGATATCAAAAGATTACCGGAGACAGTATGCCCTTTAAATTGA 1728 0.3918 MLHFLGWLFPSFNFLFYDSHVKEWVDELKDAVYDAEDLLDEIANQDLQRKMETDPQTSAHQVWNIFSNSLNPFADGVESRVEEIIDRLEFLAQKKDVLGLKQGVGEKLFQRWPSTSVVDESGVYGRDDNKEEIIKMLVSDNSSGNEIGVISIVGMGGIGKTTLTQLVYNDESVKKYFDLEAWVCVSEEFDLLRITKTIFEATTSRGFTSDVNDLNFLQVKLKESLNGKKFLLVLDDVWNENYNNWDRLRTPLKVGSNGSKIIVTTRSENVALVMRSVHTHRLGQLSFEDCWWLFAKHAFENGDPSAHPYLEAIGKEIVKKCQGLPLAAKTLGGLLHFKVQADEWDNILRSEMWDLPSNEILPALRLSYYHLPSHLKQCFAYCSIFPKDYQFQKERLVLLWMAEGFLQQPKSKKRMEEVGDQYFHELLSRSFFQKSSSRNSCFVMHDLVNDLAQLVSGEFCIQLGDGWGHETYEKVCHLSYYRSEYDAFERFANFIEVKRLRTLFTLQLQFLPQSYLSNRILDKLLPKFRCLRVLSLFNYKTINLPDSIGNLKHLRYLNVSHSDIKRLPETVCPLN* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1203 575 SUPERFAMILY L domain-like 443 573 - -
Vvi12g1203 575 Gene3D - 16 82 - -
Vvi12g1203 575 Gene3D - 284 372 IPR042197 -
Vvi12g1203 575 PRINTS Disease resistance protein signature 149 164 - -
Vvi12g1203 575 PRINTS Disease resistance protein signature 549 565 - -
Vvi12g1203 575 PRINTS Disease resistance protein signature 224 238 - -
Vvi12g1203 575 PRINTS Disease resistance protein signature 321 335 - -
Vvi12g1203 575 Coils Coil 25 45 - -
Vvi12g1203 575 Gene3D - 373 453 IPR036388 -
Vvi12g1203 575 Gene3D - 107 279 IPR027417 -
Vvi12g1203 575 Pfam Rx N-terminal domain 18 54 IPR041118 -
Vvi12g1203 575 PANTHER DISEASE RESISTANCE PROTEIN RP 24 574 IPR044974 GO:0006952
Vvi12g1203 575 FunFam Probable disease resistance protein At1g61300 110 279 - -
Vvi12g1203 575 FunFam Probable disease resistance protein At1g63360 368 454 - -
Vvi12g1203 575 Pfam NB-ARC domain 127 348 IPR002182 GO:0043531
Vvi12g1203 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 382 IPR027417 -
Vvi12g1203 575 Gene3D Ribonuclease Inhibitor 493 575 IPR032675 -
Vvi12g1203 575 Coils Coil 74 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1203 Vvi-Chr12 17505429 17508679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1203 132 455 WRKY Transcription Factor Family AT5G45050 26.377 2.72e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1203 - - vvi:100852516 1115.91