Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1200 ATGGGGAAGTTTTCAGTACAGCAGCGGCTGCACCAGCAGAATGAGGATGAGGTCGTTTCCCGCTTCTTCTGCCGGACATGTTCGGTGGGAATCGTTCGGATTCGTCAGGAGTTCGATCTCAAATGCGTCGTCGTTTTGTTGCTGACCCTCTCTGTCTTTGTCTGCGCCTTGTTCTGGGCTCTTCCTCTCCGCTCTGTCAAAACTGAGTTTGATGCAAAAGATTCGATTAAGCTCGGTGCTACGGTTCAAGCATGCTTCAAACTGCAAAAGCCAGTTTCGTTGCTTATTCCACACATTCGAAGATTAGAGTATGATATCTCAGGGGAAATAGGTGTCCCATATACAAAGGTGGTTGCTCTATCAATGCACCAGGCAGGTGCTTCTAACTGGACTGATGTGGTGTTTGGTGTTCTTTCGGATCCAATAAATGTTCCAATAAATCCAGTGTCTCTTAGTGTGCTCAGATCATCTTTAATTGAGCTGTTCCTTCAGCAATCCAATCTAACTTTGACAACATCAATTTTCGGGCAGTCATCTATGTTTGAACTTCTAAAGTTTCAAGGCGGAATCACTGTAATCCCTCTACAATCTACTTCCATTTGGCAGATACCACAGGTCCTATTTAACTTTACTCTCCTGAATTCTATATCGGAGATACAGGACAAGTTGGCTCAGCTTAAGGAACAGTTGAAAGTTGGATTGCATCTGAGGCCTTATGAGAATGTTTATTTGCAGATAACAAATGTAATTGGCTCAACAGTAGACCCACCAGTTACAGTTCAGGCTTCAATTATGTCAGATTTTGGGATTCTTTTGCCGCAGAGATTGAAGCAGTTGGCTCAAACAATTACGGGCTCCCCTTCAAAGAATCTTGGCCTGGATAACTCAGTCTTTGGTACAGTTAAGGGAGTTAGTTTATCTTCTTATTTGGCGGATACGCTTCATGCAACCCCTCCTACTCCTTCTCCAGCTCCATCTCCAGAACCACATGATTATGCAGGACCATCTCCTTCCCCATATGCCAATCTTTCTCCATCATATCCCCCAGTTCTGTCACCTGACACCCATCATGCCTCACCTTGTTCTAACTGCAATGCTTTCCCCCCATCTGCACCAAGCCCTGACGAGGGGCCTTCTCATTCTTTCCCTCCCATTTCAATGTCTCCTTTGCCTTCAGCTGTTTCACCTCGTGCCAGTTCTCCTTACCCACCTCCCCTGGTTCCTAGGACACAGTTGTCCCCTAATCTGTCACCTTCACCAACAGTATCATCTGACACCAGTCAAGACCAGGACAAAGGAACTGGGAAACACATTGTATCTCCACCGTCCTTATACTCAGCATCATCATCATCTTTTGCAGGTTCATCCAACAAGATCTGGTTATTCGTTTTCTCTGGACTAGTCGTGTCTCATTACCTCTTATGGTTGCATATATAG 1437 0.4523 MGKFSVQQRLHQQNEDEVVSRFFCRTCSVGIVRIRQEFDLKCVVVLLLTLSVFVCALFWALPLRSVKTEFDAKDSIKLGATVQACFKLQKPVSLLIPHIRRLEYDISGEIGVPYTKVVALSMHQAGASNWTDVVFGVLSDPINVPINPVSLSVLRSSLIELFLQQSNLTLTTSIFGQSSMFELLKFQGGITVIPLQSTSIWQIPQVLFNFTLLNSISEIQDKLAQLKEQLKVGLHLRPYENVYLQITNVIGSTVDPPVTVQASIMSDFGILLPQRLKQLAQTITGSPSKNLGLDNSVFGTVKGVSLSSYLADTLHATPPTPSPAPSPEPHDYAGPSPSPYANLSPSYPPVLSPDTHHASPCSNCNAFPPSAPSPDEGPSHSFPPISMSPLPSAVSPRASSPYPPPLVPRTQLSPNLSPSPTVSSDTSQDQDKGTGKHIVSPPSLYSASSSSFAGSSNKIWLFVFSGLVVSHYLLWLHI* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1200 478 MobiDBLite consensus disorder prediction 396 411 - -
Vvi12g1200 478 PANTHER F20B24.21 1 463 - -
Vvi12g1200 478 Coils Coil 209 229 - -
Vvi12g1200 478 MobiDBLite consensus disorder prediction 315 440 - -
Vvi12g1200 478 MobiDBLite consensus disorder prediction 412 429 - -
Vvi12g1200 478 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1200 Vvi-Chr12 17424547 17434783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1200 16 312 C3H Transcription Factor Family AT3G10810 40.940 4.63e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1200 - - vvi:100248076 917.916