Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1198 ATGAGAACCTACCATTACTACTGGTGCCAGCATTGCCAAAGAACAGTAAGGATTGCATCCGGGAACCTATCAGAAATTCTTCTATGTCCTTTTTGCTCATGCAGACTCCAGTATGAGTTCCATGCACCGAGGCAAAGGCTTGTCCCCACTTTTACAGGCCTAGGAGTCCTGGCAGCTGAGCTGTTGGAGGATATGGATGTTATTCTGCTCCCAAGGAGGCCGCAAACCACTGGTTTAAATGGAGTTTTATGGGGAACTGAAATGCGTATTCCCTCCATTAATGTCCCATCTAGGGTCGGCCGTCATTTGCGTAGACCACCTAGGCCACGTAGGCCGGTGGCTGCACCTGAAAATGTGGCGGCGCCCAGAGTGGGTGGAAGCAATTTTACCATGAGGGACGTGCTGAACGAGGCGATGGAGGAGCTTACTCACAATGAGGTGACGGGGGAGAACACCCAAAATGACAGGCCTGGGCCACCACCTGCTGCCCCTTCAGCCATTGAGGCCTTGCCATCAGTAAGGCTGACACCCACCCATTTGAGGAATGACCCTTGTTGCCCAGTTTGCAAGGAGGAATACCAGGCTGGTGAGGAAGTGAGGGAGATGCCCTGCAAGCATATGTATCACTCTGACTGCATTGTTCCTTGGTTGAGAATTCATAACTCTTGCCCCGTTTGCCGCCATGAGCTGGAAGCTTCCCCCAACCCTCATGCTGTTCACAACACTAGAGCTGAAAATTTTGATGTTGAAGAGGTGACGAACCGCCTAGTCTGGCCATGGAACTAG 786 0.5178 MRTYHYYWCQHCQRTVRIASGNLSEILLCPFCSCRLQYEFHAPRQRLVPTFTGLGVLAAELLEDMDVILLPRRPQTTGLNGVLWGTEMRIPSINVPSRVGRHLRRPPRPRRPVAAPENVAAPRVGGSNFTMRDVLNEAMEELTHNEVTGENTQNDRPGPPPAAPSAIEALPSVRLTPTHLRNDPCCPVCKEEYQAGEEVREMPCKHMYHSDCIVPWLRIHNSCPVCRHELEASPNPHAVHNTRAENFDVEEVTNRLVWPWN* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1198 261 SMART ring_2 186 226 IPR001841 -
Vvi12g1198 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 141 230 - -
Vvi12g1198 261 Pfam Ring finger domain 186 227 IPR001841 -
Vvi12g1198 261 SUPERFAMILY RING/U-box 166 236 - -
Vvi12g1198 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 233 IPR013083 -
Vvi12g1198 261 MobiDBLite consensus disorder prediction 147 166 - -
Vvi12g1198 261 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Vvi12g1198 261 FunFam E3 ubiquitin-protein ligase RING1-like 148 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1198 Vvi-Chr12 17414404 17415189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1198 2 259 C3H Transcription Factor Family AT1G68180 30.303 2.16e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1198 K11982 - vvi:100265241 536.954