Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1197 ATGTCCTTGGACCGTCGTCCTCGCATAATTGTCCACCATGGAACCCGAAGAATGAGAAGCTACCATTACTACTGGTGCCAGCATTGCCAAAGAACAGTGAGGATTGCCTCCGGGATCCTATCAGAAATTCTTCTATGTCCTTTTTGCTCATGCAGACTCCAGTATGAGTTCCATGCACCGAGGCTAAGGCTTGTCCCCACTTTTACAGGCCTAGGAGTCCTGGCAGCTGAGCTGTTGGAGGATGTGGATGTTAGTCTGCTGCCAAGGAGGCGGCAAAACACTGATTTAAACGGAGTTTTATGGGGATCTGAAATGCGTATTCCCTCCATTAATGTCCCATCTGGGGTCGGCCGTCATTTGCTTACACCACCTCGGCCAGGCAGGCCGGTGGCTGCACCTGAAAATGTGGCAGTGCCCAGATTGGATGGAAGCAATTTTGCCATTAGGGACGTGCTGAACGAGGAGATGGAGGAGCTTACTCACAATGAGGTGACGGGGGAGAACACCCAAGATGACAGGCCTGGGCCACCACCTGCTGCCCCTTCAGCCATTGAGGCCTTGCCATCAGTAAGGCTGACACCCACCCATTTGAGGAACGACCCTTGTTGCCCAGTTTGCAAGGAGGAATACCGGGCTGGTGAGGAAGTGAGGGAGATGCCCTGCAACCATTTGTATCACTCCGACTGCATTGTTCCTTGGTTGAGAATTCATAACTCTTGCCCCGTTTGCCGCTATGAGCTGCAAGCTTCCCCCAACCCTCATGCTGTTCACAACACTAGAGCTGAAAATTTTGATGTTGAAGAGGTGACGAACCGCCTAGTCTGGCCATGGAACCAATGGTTCTCTATGTGGCCGTTCCGTTCATTGCCAAATTGGAGGTACCCAGATGGTCTTGATTTCCATTACAATCGGCGTGGAGGTGAGACTCAAAATCATGCCTTTTTCTTCCTCATTTTTCTGAAAATCATGAAAGATTTTAAGTTTCTTTGCAAACAAAACCCCCTATACCTCCTAACAAATAATGAACTGAAGTGTGCTGTTTCCTGTAGCTGGCACCTGGTGGCCTTCCTGGCTCATTCTATAGCATGTATATGTATGTTGCAGCAGCACAGTCCCTGTGGGGAAGCTGCTTATAACATTAGCTTTATGATTGAATTGTTCCTTAGGCAGGTAAGTATATATATCCAATATATGCTAATTTCAAGGTTGCTCTGGTGGAAAGATGTCGAGGATTCGCAGTTAGGTTTCATAAGGGGGCAGTGTACAGTGCTTGAAGCTCCTAACTATCCTGAAGTGTTTTTTCTTCTTTCTTTCAAAGTTTTCAACATTAAAAAAAAAAAAAAAAATGTAGTGTGA 1356 0.4727 MSLDRRPRIIVHHGTRRMRSYHYYWCQHCQRTVRIASGILSEILLCPFCSCRLQYEFHAPRLRLVPTFTGLGVLAAELLEDVDVSLLPRRRQNTDLNGVLWGSEMRIPSINVPSGVGRHLLTPPRPGRPVAAPENVAVPRLDGSNFAIRDVLNEEMEELTHNEVTGENTQDDRPGPPPAAPSAIEALPSVRLTPTHLRNDPCCPVCKEEYRAGEEVREMPCNHLYHSDCIVPWLRIHNSCPVCRYELQASPNPHAVHNTRAENFDVEEVTNRLVWPWNQWFSMWPFRSLPNWRYPDGLDFHYNRRGGETQNHAFFFLIFLKIMKDFKFLCKQNPLYLLTNNELKCAVSCSWHLVAFLAHSIACICMLQQHSPCGEAAYNISFMIELFLRQVSIYIQYMLISRLLWWKDVEDSQLGFIRGQCTVLEAPNYPEVFFLLSFKVFNIKKKKKNVV* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1197 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 250 IPR013083 -
Vvi12g1197 451 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Vvi12g1197 451 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 157 247 - -
Vvi12g1197 451 FunFam E3 ubiquitin-protein ligase RING1-like 165 250 - -
Vvi12g1197 451 CDD RING-H2_RNF126-like 203 244 - -
Vvi12g1197 451 Pfam Ring finger domain 203 244 IPR001841 -
Vvi12g1197 451 SMART ring_2 203 243 IPR001841 -
Vvi12g1197 451 MobiDBLite consensus disorder prediction 163 182 - -
Vvi12g1197 451 SUPERFAMILY RING/U-box 183 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1197 Vvi-Chr12 17398801 17400234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1197 1 292 C3H Transcription Factor Family AT1G68180 31.399 7.38e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1197 K11982 - vvi:104880985 662.914