Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1183 ATGGCTTCTTCTTCAACCAGTCTCTCAGTAGCATCTTCCTCTTCCACCCATCCACGAAAGTATGAGGTCTTCCTCAGTTTCAGAGGAGAAGACACCCGCAAAAGCTTTACTGATCATCTTCACGAGGCGCTTCATCGATGTGGAATCAACACTTTCATAGATGACCAACTCAGGAGAGGCGAACAAATATCTTCAGCACTCCTACAGGCAATTGAAGAATCAAGGTTTTCCATCATCATTTTCTCCGAACACTATGCTTCTTCAAGTTGGTGTTTGGATGAACTTACAAAGATTCTTGAGTGTGTCAAAGTGGGGGGACATACAGTTTTTCCGGTTTTCTATAATGTGGATCCCTCTCATGTAAGAAAACAAACAGGGAGTTATGGAGTAGCATTTACAAAGCATGAAAAAGTTTACAGGGACAACATGGAGAAAGTGCTCAAGTGGAGAGAAGCTCTAACTGTGGCATCCGGACTTTCTGGATGGGATTCACGAGATAGACATGAATCCAAGGTTATTAAGGAAATTGTTTCAAAGATCTGGAATGAACTGAACGATGCATCCTCATGTAACATGGAGGCTCTAGTTGGAATGGATTCTCATATACAGAACATGGTTTCATTATTATGTATTGGGTCAGATGATGTTCGGATGGTAGGAATTTGGGGCATGGCTGGCATAGGTAAGACTACAATTGCTGAGGCTGTTTATCAGAAAATTTGCACTCAATTCGAAGGTTGTTGCTTTCTTTCAAATGTTAGAGAAAAATCACAAAAAAATGACCCAGCTGTAATACAAATGGAACTCCTTTCACAAGTTTTTTGGGAAGGCAATCTAAATACAAGAATTTTCAATAGAGGAATCAATGCTATAAAAAAAACACTCCACTCCATGAGAGTCCTTATTGTTCTTGACGATGTGGATCGCCCACAACAATTGGAGGTTTTAGCTGGAAATCATAACTGGTTTGGTCCAGGAAGTCGAATTATCATCACAACTAGAGAAAAGCATTTGCTAGATGAGAAAGTGGAAATATATGAAGTTAAGGAATTAAACAAAGATGAAGCTCGTAGGCTCTTTTATCAGCATGCCTTTAAATATAAACCTCCTGCAGGAGATTTTGTACAACTATGTGACCGTGCCCTAAATTATACAAAGGGCATTCCCTTAGCCCTTAAAATCTTGGGTCGTTTTTTATACAATAGAAGCAAAAAGGAATGGGAGAGTGAATTGGAAAAACTTAGAAGAATTCCAAACAAAGAGATTCAAGATGTGCTGAGAATAAGCTTTGATGGATTAGATGATAATCAAAAGGATATATTTTTCGACATCGCATGCTTCTTTAAAGGGCAAGACAAAGATTACGTCATAAAACTACTGAAAAGTTGTGATTTCTTTCCAGAAATTGGAATACGTAATCTTATAGATAAGTCTCTTAAACTTCCAGAGGTCCAGGGAGCCATGGATAATTTATCAGAGCTTTCTTTAAAAGGGACTGCTATAAAAGGATTGCCATTGTCCATTGAATATCTGAATGGACTTGCTTTATTTAATCTGGAAGAGTGCAAAAGCCTTGAGTCATTACCGGGCTGCATTTTTAAGTTGAAGTCCCTGAAAACTCTTATTCTTTCAAACTGCTTAAGACTGAAGAAGCTTCCAGAGATACAGGAAAATATGGAGAGTTTGAAAGAGCTTTTTCTAGATGACACTGGTCTAAGAGAGCTACCTTCATCAATTGAGCATCTAAATGGGCTTGTTTTGTTGAAGCTGAAAAATTGTAAAAGACTTGCAAGTCTTCCAGAAAGCATTTGTAAGCTGACGTCTCTTCAGACTCTTACTCTCTCTGGTTGTTCAGAACTGAAGAAATTGCCAGATGATATGGGGAGCCTACAATGTTTATTAAAGCTCAAAGCAAATGGAAGTGGTATACAAGAGGTACCCTCCTCTATTACTCTTTTGACAAGGCTTCAAGTATTATCATTAGCAGGATGTAAAGGGGGGGGATCTAAGTCAAGGAATCTGGCTTTATCTTTGCGCGCATCACCAACTGATGGATTGCGACTGTCTTCTTTGACGGTTCTACACTCCTTGAAAAAGTTGAATTTAAGTGACCGCAACCTACTGGAAGGAGCACTACCCAGTGATCTTAGCTCCTTATCTTGGTTGGAATGTTTAGATCTGAGTAGAAACAATTTCATCACCGTGCCTACTAGCCTGAGTCGACTTCCTCACCTCAGAAGGCTCATAGTGGAACACTGCAAGAATCTTCAATCATTGCCAGAGCTTCCGTCAAGTATTAAAGAATTATTGGCCAATGATTGCACATCCCTGGAAACTTTTTCATATCCATCAAGTGCATATCCATTGAGGAAGTTCGGAGATTTCAACTTCGAATTTTCTAATTGCTTCCGACTAGTGGGGAATGAGCAGAGTGACACTGTGGAAGCTATCCTACAGGAAATTCGGCTTGTTGCATCGATACAGAAATCCATGGCTCCAAGTGAGCATTCTGCCAGGTATGGTGAAAGTCGGTATGACGCTGTTGTTCCTGGGAGTAGGATTCCAGAGTGGTTCACCCATCAGAGCGAGGGGGATTCAATAACTGTAGAGCTGCCTCCAGGTTGTTATAATACCAATTCGATTGGATTGGCTGCTTGTGCTGTTTTCCACCCAAAATTCAGCATGGGTAAGATCGGCCGTTCTGCATATTTTAGTGTGAATGAATCTGGCGGCTTCTCTCTCGACAACACGACTTCCATGCATTTTTCAAAAGCTGACCACATCTGGTTTGGGTATCGATTAATTTCTGGAGTGGATTTACGCGATCACTTGAAGGTTGCATTTGCTACATCCAAAGTTCCGGGCGAAGTGGTGAAAAAGTGTGGGGTTCGTCTAGTATATGAGCAAGATGAGATGGGGAATGCATCTTTCCTTTCGGCACCATGTGGCCGGGAGAAGGAGATGAATCAAATTCAGAGTCAGGAGACCGACACCGCCGCTTCCTTTTCCAAACTTCCCCCTGTGGTTATACATGATGAAAGTTGTTCGTATATCGCATTTCCGTCTCGAAGGTTGCCAGCTATCTAA 3087 0.4091 MASSSTSLSVASSSSTHPRKYEVFLSFRGEDTRKSFTDHLHEALHRCGINTFIDDQLRRGEQISSALLQAIEESRFSIIIFSEHYASSSWCLDELTKILECVKVGGHTVFPVFYNVDPSHVRKQTGSYGVAFTKHEKVYRDNMEKVLKWREALTVASGLSGWDSRDRHESKVIKEIVSKIWNELNDASSCNMEALVGMDSHIQNMVSLLCIGSDDVRMVGIWGMAGIGKTTIAEAVYQKICTQFEGCCFLSNVREKSQKNDPAVIQMELLSQVFWEGNLNTRIFNRGINAIKKTLHSMRVLIVLDDVDRPQQLEVLAGNHNWFGPGSRIIITTREKHLLDEKVEIYEVKELNKDEARRLFYQHAFKYKPPAGDFVQLCDRALNYTKGIPLALKILGRFLYNRSKKEWESELEKLRRIPNKEIQDVLRISFDGLDDNQKDIFFDIACFFKGQDKDYVIKLLKSCDFFPEIGIRNLIDKSLKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGLALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGSLQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLRLSSLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLIVEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNEQSDTVEAILQEIRLVASIQKSMAPSEHSARYGESRYDAVVPGSRIPEWFTHQSEGDSITVELPPGCYNTNSIGLAACAVFHPKFSMGKIGRSAYFSVNESGGFSLDNTTSMHFSKADHIWFGYRLISGVDLRDHLKVAFATSKVPGEVVKKCGVRLVYEQDEMGNASFLSAPCGREKEMNQIQSQETDTAASFSKLPPVVIHDESCSYIAFPSRRLPAI* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1183 1028 PRINTS Disease resistance protein signature 218 233 - -
Vvi12g1183 1028 PRINTS Disease resistance protein signature 294 308 - -
Vvi12g1183 1028 PRINTS Disease resistance protein signature 385 399 - -
Vvi12g1183 1028 PRINTS Disease resistance protein signature 604 620 - -
Vvi12g1183 1028 SMART LRR_typ_2 719 742 IPR003591 -
Vvi12g1183 1028 SMART LRR_typ_2 606 630 IPR003591 -
Vvi12g1183 1028 SMART LRR_typ_2 559 582 IPR003591 -
Vvi12g1183 1028 SMART LRR_typ_2 488 511 IPR003591 -
Vvi12g1183 1028 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 186 - -
Vvi12g1183 1028 Pfam NB-ARC domain 208 418 IPR002182 GO:0043531
Vvi12g1183 1028 SMART till_3 20 159 IPR000157 GO:0007165
Vvi12g1183 1028 SUPERFAMILY L domain-like 481 778 - -
Vvi12g1183 1028 Gene3D - 350 434 IPR042197 -
Vvi12g1183 1028 Pfam C-JID domain 849 970 IPR045344 -
Vvi12g1183 1028 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 444 IPR027417 -
Vvi12g1183 1028 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Vvi12g1183 1028 Gene3D - 18 188 IPR035897 -
Vvi12g1183 1028 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 489 IPR044974 GO:0006952
Vvi12g1183 1028 Pfam TIR domain 20 194 IPR000157 GO:0007165
Vvi12g1183 1028 Gene3D Ribonuclease Inhibitor 473 672 IPR032675 -
Vvi12g1183 1028 Gene3D Ribonuclease Inhibitor 673 821 IPR032675 -
Vvi12g1183 1028 ProSiteProfiles TIR domain profile. 19 184 IPR000157 GO:0007165
Vvi12g1183 1028 Gene3D - 189 347 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1183 Vvi-Chr12 17283683 17289426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1183 19 785 WRKY Transcription Factor Family AT4G12020 27.952 9.24e-65 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1183 - - vvi:100261701 1075.85