Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1172 ATGATTCATTGGCCTCCTCTCTGTATACTCCCACTCTCTCTCCCCCCCATTTTTCCTCTTGTTCTAACCAAGTCCTCGTTTCCATATATGGCCATGGCAAGAGGGATTGCAGCTGCAATTCCCACAGCCACAGCCCTTCTTCTGTGGGTTGTCCTCCATTTGAGGACAGCCCATGCAGCCACCTACACTGTTGGAGGCTCCAGTGGGTGGACTTTCAATGTGGAGAGCTGGACTGATGGGAAGAGCTTCAGAGCTGGTGATGTGCTGGTGTTTAACTATGACCCAAAGGATCATGATGTGGTAGCGGTGGACCAATACAGCTACGACACATGCACTGTTGGAGAAGGGGCCAAAGTCTATGAATCTGGAAATGATAGCATTGAGCTTGTGAAGGGAGAGAACTGCTTCATCTGCTCTTTTCTAAGCCACTGTGACTCTGGCATGAAGATTCACATGATTGCACTCTAA 468 0.4915 MIHWPPLCILPLSLPPIFPLVLTKSSFPYMAMARGIAAAIPTATALLLWVVLHLRTAHAATYTVGGSSGWTFNVESWTDGKSFRAGDVLVFNYDPKDHDVVAVDQYSYDTCTVGEGAKVYESGNDSIELVKGENCFICSFLSHCDSGMKIHMIAL* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1172 155 FunFam basic blue protein-like 60 154 - -
Vvi12g1172 155 CDD Plantacyanin 60 154 IPR041844 -
Vvi12g1172 155 Gene3D - 60 154 IPR008972 -
Vvi12g1172 155 Pfam Plastocyanin-like domain 70 148 IPR003245 GO:0009055
Vvi12g1172 155 PANTHER BLUE COPPER PROTEIN 56 151 IPR039391 GO:0009055
Vvi12g1172 155 SUPERFAMILY Cupredoxins 60 153 IPR008972 -
Vvi12g1172 155 ProSiteProfiles Phytocyanin domain profile. 60 155 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1172 Vvi-Chr12 17114212 17115090 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1172 30 155 Phytocyanin Superfamily AT1G17800 35.766 7.71e-20 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1172 - - vvi:100244651 287.73