Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g1171 ATGGGTGAGGGAAGAGGCAGCGCAATTGTGGCCACAGTTCTGCTGTTCTGCCTGCTGCTTCATTGTGACACTGCTCATGCCACCACCTACGCTGTTGGAGGTGCCAAAGGTTGGACCCTCGATGTCGTAGGCTGGCCTTATGGAAAGCGCTTCATGGCCGGTGATATCCTTGTGTTCAACTACAACGCAGCCGCCCACGACGTAGTTTCTGTGAACAAAGTTGGTTACAACACATGTACCATGCCTCGAGGAGCTTCCAAAGTTTATCACACAGGAAAAGATCAGATCAAGCTGGTGAAGGGCCAGAACTTCTTCATCTGCAGTTTTCCTGGACATTGTCAGTCTGGAATGAAGATAGCCATCACTGCTATGTAA 375 0.5013 MGEGRGSAIVATVLLFCLLLHCDTAHATTYAVGGAKGWTLDVVGWPYGKRFMAGDILVFNYNAAAHDVVSVNKVGYNTCTMPRGASKVYHTGKDQIKLVKGQNFFICSFPGHCQSGMKIAITAM* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g1171 124 SUPERFAMILY Cupredoxins 29 123 IPR008972 -
Vvi12g1171 124 Pfam Plastocyanin-like domain 42 117 IPR003245 GO:0009055
Vvi12g1171 124 Gene3D - 28 123 IPR008972 -
Vvi12g1171 124 PANTHER BLUE COPPER PROTEIN 27 122 IPR039391 GO:0009055
Vvi12g1171 124 ProSiteProfiles Phytocyanin domain profile. 28 124 IPR003245 GO:0009055
Vvi12g1171 124 CDD Plantacyanin 28 123 IPR041844 -
Vvi12g1171 124 FunFam basic blue protein-like 28 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g1171 Vvi-Chr12 17094927 17095835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g1171 8 124 Phytocyanin Superfamily AT1G17800 43.089 1.04e-22 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g1171 - - vvi:100253145 262.692